CN186153

Overview
NameCN186153
Unique NameCN186153
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186153_ssr24 microsatellite CN186153_ssr24:24..38. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CN186153 vs. ExPASy Swiss-Prot
Match: LANC2_MOUSE (LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 50/147 (34.01%), Postives = 76/147 (51.70%), Query Frame = 3 
Query:  282 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRDVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAV 704
            D + YTG  G A + L+ Y +TG+Q  LL S   +D     +R+ S R VTFLCG  G  A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L+A L++N  +G GT+    +  +V A+
Sbjct:   99 DCSAYTGWTGIALLYLQLYRVTGDQTYLLRS---LDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPD-----------ELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAI 231
[Close]
BLAST of CN186153 vs. ExPASy Swiss-Prot
Match: LANC2_HUMAN (LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/147 (32.65%), Postives = 76/147 (51.70%), Query Frame = 3 
Query:  282 DPTLYTGLLGTAFICLRSYELTGNQQELLLSAEIIDTCASVVRD-STRDVTFLCGRGGIYAIGAVVANRMGDRSRRDFFLNLFLE-----IAQERALPAGPEEGGFGMSYDLLYGRAGFLWAALFVNKHLGAGTLPNELLMPIVDAV 704
            D + YTG  G A + L+ Y +T +Q  LL S   +D     +R+ + R VTFLCG  G  A+GAV+ +++         +   L+     + QE  LP            +LLYGRAG+L+A L++N  +G GT+    +  +V+A+
Sbjct:   99 DCSAYTGWTGIALLYLQLYRVTCDQTYLLRS---LDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPD-----------ELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAI 231
The following BLAST results are available for this feature:
BLAST of CN186153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
LANC2_MOUSE4.085e-1334.01LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1... [more]
LANC2_HUMAN2.241e-1132.65LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186153 ID=CN186153; Name=CN186153; organism=Citrus sinensis; type=EST; length=706bp
CCCCGAATTTATTTCTAAAAAAAAATAATAATAATAATACATAAACTACA
TGCCCCTTTATAGAGTTTGCTTCTCAGGACAGCCATGCCCATGAAGCCCA
TAACAACGGCGAACGCCACGATTTGCTTCATCACGACAGCATCGTCGATC
CAACGGCCGCCATTAACATGTCCCTTCCATGTGAAACTTTTCTGAAAGCT
GCCGTGTGTCTTAAAGACCAGGTGGTGGAGGTGACCTGGCGGAGAGGTTC
TGGTGGTGGGGGCGAACCGGGTAGGGGGATGGACCCGACTCTTTATACGG
GTCTGTTGGGCACAGCTTTCATCTGCTTGAGGTCGTACGAGTTAACTGGT
AACCAGCAGGAACTGCTATTGTCCGCAGAGATTATTGACACGTGTGCTTC
TGTCGTGCGTGACTCCACCAGGGACGTGACATTTTTATGTGGTAGAGGAG
GGATTTACGCAATAGGTGCCGTGGTGGCTAACCGCATGGGAGACCGTTCA
AGGCGAGATTTCTTCTTGAATCTCTTTCTTGAGATAGCACAAGAGAGAGC
CCTCCCAGCTGGACCAGAAGAAGGCGGATTCGGAATGTCTTATGATCTCC
TTTATGGTCGAGCTGGATTTTTATGGGCTGCTTTGTTCGTAAACAAGCAT
CTCGGGGCAGGGACATTGCCTAATGAGCTTCTCATGCCTATTGTTGATGC
TGTTTT
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