CN186145

Overview
NameCN186145
Unique NameCN186145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6034 contig Csv1_Contig6034:297..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.701e-84
Identity = 148/183 (80.87%), Postives = 168/183 (91.80%), Query Frame = -3
Query:  162 FASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLIA 710
            FASL+PS+FPPGTDPNIVACFQ ADRDNSG IDDKELQGALSSYNQSFS+RTV LLMY FTN+N RKIGPKEF  +F SLQNWR++FE+ D+DRSG+IDTNELR+ALMSLG +VSPV+LDLLV+KFDK+GG+++AIEYDNFIECCLTVKGLTEKFKE+DT  SGSA F YENFML VLPFL+A
Sbjct:  153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTNSNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKFKEKDTALSGSAIFNYENFMLTVLPFLVA 335          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.348e-81
Identity = 145/183 (79.23%), Postives = 165/183 (90.16%), Query Frame = -3
Query:  162 FASLMPSSFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLIA 710
            FASL+PS F PGTDPNIVACFQ AD+D SG IDDKELQGALSSY Q FS+RTV LLMY FTN+NA KIGPKEF  +F+SLQNWR++FE+ D+DRSG+ID NELR+AL+SLG +VSPVVLDLLV+KFDK+GGK++AIEYDNFIECCLTVKGLTEKFKE+DT YSGSATF YE+FML VLPFLIA
Sbjct:  172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSNAMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKFKEKDTAYSGSATFNYESFMLTVLPFLIA 354          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.011e-36
Identity = 78/176 (44.32%), Postives = 119/176 (67.61%), Query Frame = -3
Query:  168 FPPGTDPNIVACFQLADRDNSGLIDDKELQGALS-SYNQSFSLRTVRLLM--YTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFL 686
            F P T P IV  F+ ADR+ SG +++ EL+ ALS S     S RT+RLL+  Y     +  ++GPKE++++++ L  WRA+F + DRDRSGK+++ +LR+A  +LG  +   V  L+V++FD   GK+  + +D+F+EC + VKGLTEKF+E D  Y+G AT +Y+ FML V+PF+
Sbjct:   49 FSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSVHQLIVSQFDDGTGKTVDLCFDSFLECGMIVKGLTEKFRENDPGYTGYATLSYDVFMLMVIPFI 224          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.239e-26
Identity = 61/174 (35.06%), Postives = 103/174 (59.20%), Query Frame = -3
Query:  165 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAVLPFLI 683
            PPG +P     F   D D SG I+ KEL+ AL ++N S F+  T  +++  F  T + ++    F  ++  LQ WRA F++ DRDRSG I+TNE+ +AL  +G  +SP  +  LV ++   GG +  ++ D FI+ C  ++ +T+ F+E+DT  +G+   +YE+F+ + +  L+
Sbjct:   98 PPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSGRVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMGYNLSPQFIQELVNRYSVRGG-TGVLQLDRFIQVCTQLQSMTQAFREKDTGMTGNVRMSYEDFLSSAITRLM 270          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.370e-25
Identity = 59/168 (35.12%), Postives = 101/168 (60.12%), Query Frame = -3
Query:  189 SFPPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 689
            + PPG DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  ++M  F  +N+ +I    F  ++  +Q WR +F++ DRDRSG I+  EL +AL  +G  +SP  + ++++++ +   +   ++ D FI+ C  ++ +TE F+E+DT   G+A  +YE+F+
Sbjct:  109 NIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMFDKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMGYQLSPQFVQIVMSRYAQRSAQ-PGLQLDRFIQICTQLQSMTEAFREKDTGQIGTAKLSYEDFI 275          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.675e-23
Identity = 61/166 (36.75%), Postives = 96/166 (57.83%), Query Frame = -3
Query:  189 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 683
            PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  LQ WR +F++ DRDRSG I + EL++AL  +G  +SP    LLV+++        A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  103 PPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSGRIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSPQFTQLLVSRYCARSA-IPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 267          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.187e-23
Identity = 59/166 (35.54%), Postives = 96/166 (57.83%), Query Frame = -3
Query:  189 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 683
            PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T + +I    F  ++  +Q W+ +F++ DRDRSG I   EL++AL  +G  +SP    LLV+++      + A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  112 PPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSGRIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSPQFTQLLVSRYCPRSA-NPAMQLDRFIQVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 276          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.312e-23
Identity = 60/166 (36.14%), Postives = 95/166 (57.23%), Query Frame = -3
Query:  189 PPGTDPNIVACFQLADRDNSGLIDDKELQGALSSYN-QSFSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFM 683
            PP  DP   + FQ  D D+SG I  KEL+ AL + N  SF+  T  +++  F  T   +I    F  ++  LQ W+ +F++ DRD SG I + EL++AL  +G  +SP    LLV+++  T     A++ D FI+ C  ++ LTE F+E+DT   G+   ++E+F+
Sbjct:  111 PPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTGRIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQMGYNLSPQFTQLLVSRY-CTRSAIPAMQLDCFIKVCTQLQVLTEAFREKDTAVQGNIRLSFEDFV 275          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.200e-21
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = -3
Query:  180 FQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAV 650
            FQ  D+D SG+I D ELQ ALS+   + F+  TVR ++  F   N   +   EF  V+  + +W+ +F   DRD SG ID NEL++AL   G  +S    D+L+ KFD+ G     I +D+FI+ C+ ++ LT+ F+  DT   G    +YE ++  V
Sbjct:   32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 187          
BLAST of CN186145 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 59/158 (37.34%), Postives = 89/158 (56.33%), Query Frame = -3
Query:  180 FQLADRDNSGLIDDKELQGALSSYNQS-FSLRTVRLLMYTFTNTNARKIGPKEFIQVFHSLQNWRAMFEKVDRDRSGKIDTNELREALMSLGLAVSPVVLDLLVTKFDKTGGKSKAIEYDNFIECCLTVKGLTEKFKERDTTYSGSATFTYENFMLAV 650
            FQ  D+D SG+I D ELQ ALS+   + F+  TVR ++  F   N   +   EF  V+  + +W+ +F   DRD SG ID NEL++AL   G  +S    D+L+ KFD+ G     I +D+FI+ C+ ++ LT+ F+  DT   G    +YE ++  V
Sbjct:   32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQG--RGQIAFDDFIQGCIVLQRLTDIFRRYDTDQDGWIQVSYEQYLSMV 187          
The following BLAST results are available for this feature:
BLAST of CN186145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
CML49_ARATH1.701e-8480.87Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH1.348e-8179.23Probable calcium-binding protein CML50 OS=Arabidop... [more]
CML48_ARATH1.011e-3644.32Probable calcium-binding protein CML48 OS=Arabidop... [more]
PEF1_DANRE1.239e-2635.06Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PEF1_XENLA1.370e-2535.12Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE1.675e-2336.75Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN2.187e-2335.54Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
PEF1_RAT8.312e-2336.14Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PDCD6_MOUSE1.200e-2137.34Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN1.568e-2137.34Programmed cell death protein 6 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186145 ID=CN186145; Name=CN186145; organism=Citrus sinensis; type=EST; length=754bp
TTTTTTTAAACCAATCATAACACTGATTTTATTTAACTAAGAGGTAAACT
ACATCCACGCAGCTTATCCACATTAAAACATCGAAAACACCTAAAACGTT
ACATCACATTCACACCAAATCCACGATTCAAAGTTATTAAACAACAAATT
TTAAAAACCTAAGCAATGAGGAATGGCAGAACAGCCAGCATGAAATTCTC
GTAAGTGAAAGTTGCAGATCCAGAGTACGTAGTATCCCTCTCCTTAAATT
TCTCCGTTAACCCCTTAACCGTGAGACAGCACTCGATGAAGTTATCATAT
TCAATGGCCTTGCTTTTGCCACCAGTTTTGTCAAACTTAGTGACAAGCAA
GTCCAATACCACGGGTGAAACCGCAAGACCTAGACTCATAAGAGCCTCCC
GCAACTCATTCGTATCAATCTTTCCACTCCTGTCCCTGTCCACTTTCTCA
AACATGGCCCTCCAGTTTTGAAGACTGTGAAACACTTGGATGAACTCCTT
AGGCCCGATTTTTCTCGCGTTAGTGTTGGTGAATGTGTACATAAGCAGAC
GAACGGTTCTCAAGCTGAAGCTCTGATTGTAAGAAGACAAGGCTCCTTGC
AACTCCTTATCGTCGATGAGGCCGCTGTTGTCCCGGTCGGCCAACTGGAA
GCACGCCACGATGTTCGGATCCGTTCCGGGAGGGAAACTGGACGGCATTA
GAGATGCAAACGGATTACCGTACGATCCCGGAGCCGGCGGATAGCCGCCT
GGAG
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