CV998102

Overview
NameCV998102
Unique NameCV998102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV998102_ssr78 microsatellite CV998102_ssr78:78..89. BLAST: Citrus ESTs to Prunus persica proteins V1
CV998102_ssr58 microsatellite CV998102_ssr58:58..72. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1610 contig Csv1_Contig1610:91..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 386.726 bits (992), Expect = 9.575e-107
Identity = 173/219 (79.00%), Postives = 196/219 (89.50%), Query Frame = -2
Query:  175 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNS--RVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 825
            A+T+  +NKC+HPVWPGIQ SAG+ LLA GGFKLP NKA++++LPPLWSGRFWGRHGC FD SGRG CATGDCGGSL CNG GG PPATLAEITLG + DFYDVSLVDGYN+AMSI+P++GSG+CSYAGCVSDLN MCP GLQVRS +  RVVACKSAC AFNSP+YCCTG FGNPQSCKPTAYS+IFK ACP+AYSYAYDDPTSIATC+ +NY++TFC
Sbjct:   20 ASTVIFYNKCKHPVWPGIQPSAGQNLLAGGGFKLPANKAHSLQLPPLWSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITLGPELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYIVTFC 238          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 8.466e-71
Identity = 133/221 (60.18%), Postives = 149/221 (67.42%), Query Frame = -2
Query:  175 IKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 831
            + AT  TL N C   VW G  A  G P L  GGF+L P  +  +  P  WSGRFW R GC FDASG GRC TGDCGG L CNG GG PP TLAE TL     +DFYDVSLVDGYN+ + I P  GSG C YAGCVSDLN  CP  L+V   + VVACKSAC  FN+ +YCC G+   P++C PT YSRIFK ACP AYSYAYDD TS  TCTG+NY +TFC
Sbjct:   21 VMATDFTLRNNCPTTVWAGTLAGQG-PKLGDGGFELTPGASRQLTAPAGWSGRFWARTGCNFDASGNGRCVTGDCGG-LRCNG-GGVPPVTLAEFTLVGDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDMLKVMDQNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGANYEITFC 238          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.309e-63
Identity = 119/228 (52.19%), Postives = 150/228 (65.79%), Query Frame = -2
Query:  175 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTG-SNYLLTFC 843
            F     A  IT  NKC + VWPG      KP L+  GF+L    + ++  P  WSGRF+GR  C  DASG+  CAT DCG G + CNG G +PPATL EIT+     QDFYDVSLVDG+N+ MS+ P  G+GKC  + C +D+N +CPA LQV+ S+  V+ACKSAC AFN P+YCCT     P++C P  YS++FK  CP+AYSYAYDD +S  TC+G   YL+TFC
Sbjct:   18 FFSGAHAAKITFTNKCSYTVWPGTLTGDQKPQLSLTGFELATGISRSVDAPSPWSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDFYDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.108e-62
Identity = 109/218 (50.00%), Postives = 138/218 (63.30%), Query Frame = -2
Query:  175 ITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCGGSLFCNGIGGSPPATLAEITLG---QQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGSNYLLTFC 816
            + + N C   VWPG+  +AG P    GGF L   +   + +P  WSGR W R GC FD+ GRG CATGDCGG L CNG  G+ PAT+ E+TLG       FYDVSLVDG+N  +S+  + G   C  A C +D+N+ CP+ L+VR    RV  C+SAC A    RYCCTG + +P +C+PT +S +FKA CPRAYSYAYDD TS+  C    YL+TFC
Sbjct:   31 LIMVNNCGESVWPGLLGTAGHPTPQSGGFHLGAGEEAALEVPAGWSGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSALEVRDREGRVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYLITFC 248          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.108e-62
Identity = 110/224 (49.11%), Postives = 147/224 (65.62%), Query Frame = -2
Query:  175 IKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 831
            + +   T  NKC + VWPG     G P L   GF+L    + ++ +   WSGRFWGR  C  D+SG+ +C+TGDCG G + CNG G SPPA+L E+TL     QDFYDVSLVDG+N+ + + P  GSG C+   C +++N +CPA L  + S+  V+ CKSAC A N P+YCCTG++G P +C PT +S++FK  CP+AYSYAYDD +S  TC G  NY +TFC
Sbjct:   20 VYSAKFTFTNKCPNTVWPGTLTGGGGPQLLSTGFELASGASTSLTVQAPWSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDFYDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.147e-59
Identity = 110/228 (48.25%), Postives = 145/228 (63.60%), Query Frame = -2
Query:  175 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 843
            F     A  IT  N C + VWPG      KP L+  GF+L    + ++  P  WSGRFWGR  C  DA+G+  C T DCG G + CNG G  PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C +++N +CPA LQV++ +  V++CKSAC AF   +YCCT     P++C PT YS IF+  CP+AYSYAYDD  S  TC+G  +Y++TFC
Sbjct:   18 FFSGAHAAKITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDAPSPWSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.555e-59
Identity = 113/222 (50.90%), Postives = 140/222 (63.06%), Query Frame = -2
Query:  175 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 825
            A TI+  N C + VWPG   S  KP L+  GF+L    ++ +  P  W+GRFW R GC  DASG+  CAT DC  G + CNG G  PPATLAE  +  G  QDFYDVSLVDG+N+ MS+ P  G+G C  A C +++N +CP+ LQ + S+  VVAC SAC  F +P+YCCT     P++C PT YS IF  ACP AYSYAYDD     TC G  NY +TFC
Sbjct:   23 AATISFKNNCPYMVWPGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 9.087e-57
Identity = 111/222 (50.00%), Postives = 139/222 (62.61%), Query Frame = -2
Query:  175 ATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDC-GGSLFCNGIGGSPPATLAEITL--GQQQDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQ-VRSNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 825
            A T++  N C + VWP   AS G P L+  GF+L    ++ +  P  WSGRFW R  C  DASG+  C T DC  G L CNG  G PPATLAE T+  G  QDFYDVSLVDG+N+ MS+ P  G+G C    C +++NL+CP+ LQ + S+  VVAC SAC  F  P+YCCT      + C PT YS+IF   CP AYSYA+DD   + TC+G  NYL+TFC
Sbjct:   23 AATMSFKNNCPYTVWP---ASFGNPQLSTTGFELASQASFQLDTPVPWSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQDFYDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFC 241          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 2.644e-56
Identity = 103/209 (49.28%), Postives = 137/209 (65.55%), Query Frame = -2
Query:  175 VWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQ--QDFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVRS-NSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 786
            VWPG      KP L+   F+L    + ++  P  WSGRFWGR  C  DA+G+  C T DCG G + CNG G  PPATL EIT+     QD+YDVSLVDG+N+ MS+ P  G+G+C  + C +++N+ CPA LQV++ +  V++CKSAC AF   +YCCT     P++C PT YS IF+  CP+AYSYAYDD  S  TC+G  +Y++TFC
Sbjct:    3 VWPGTLTGDQKPQLSLTAFELASKASQSVDAPSPWSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of CV998102 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 3.453e-56
Identity = 109/228 (47.81%), Postives = 142/228 (62.28%), Query Frame = -2
Query:  175 FSHNIKATTITLFNKCEHPVWPGIQASAGKPLLARGGFKLPPNKAYTIRLPPLWSGRFWGRHGCRFDASGRGRCATGDCG-GSLFCNGIGGSPPATLAEITLGQQQ--DFYDVSLVDGYNIAMSILPIRGSGKCSYAGCVSDLNLMCPAGLQVR-SNSRVVACKSACFAFNSPRYCCTGSFGNPQSCKPTAYSRIFKAACPRAYSYAYDDPTSIATCTGS-NYLLTFC 843
            F     +  IT  N C   +WPG   S  KP L   GF L    + T+ +   W GRFW R  C  + SG+  C T DC  G + CNG G  PPA+L EI +   +  DFYDVSLVDGYN+ +S+    G+G C    C +++N +CPA LQV+ S++ V+ACKSAC AFN P+YCCTG+F   ++C  T YSRIFK  CP+AYSYAYDD TS  TC+G+ +Y++TFC
Sbjct:   16 FLSGAHSAKITFTNNCPRTIWPGTLTSDQKPQLPNTGFVLASKASLTLGVQAPWKGRFWARTRCTTN-SGKFTCETADCSTGQVACNGNGAIPPASLVEINIAANRGMDFYDVSLVDGYNLPVSVATRGGTGDCKATSCRANVNAVCPAELQVKGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
The following BLAST results are available for this feature:
BLAST of CV998102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
TLPH_ARATH9.575e-10779.00Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH8.466e-7160.18Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE1.309e-6352.19Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLPH_ORYSJ1.108e-6250.00Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP1_PYRPY1.108e-6249.11Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TP1A_MALDO1.147e-5948.25Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TLP_PRUAV2.555e-5950.90Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TLP2_PRUPE9.087e-5750.00Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TP1B_MALDO2.644e-5649.28Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_CASSA3.453e-5647.81Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_Q-1_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC49_A07_063, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998102 ID=CV998102; Name=CV998102; organism=Citrus sinensis; type=EST; length=904bp
TTTTTTTTTTTTTTTTTGATACCAACAAACTACCGTACCATGATATTATT
ACTAGTAAACATAACATAACATATGATATAATAATAATAATCTTATCTAT
TACAAATGAACTTGATAGCGTATGTAGTAGTAGTGGTAGATAATGGGTAT
AAAAATCTAACGGCGATGGCGGGGGCAGAAAGTGAGCAAGTAGTTGCTGC
CGGTGCAAGTAGCAATACTAGTGGGATCATCATAAGCATAGCTGTAAGCT
CTGGGACAAGCGGCCTTGAAAATCCTGGAGTAAGCAGTGGGCTTGCAGGA
TTGAGGATTCCCAAAGCTCCCAGTGCAGCAATACCTGGGCGAGTTGAAAG
CGAAACAAGCACTTTTGCAGGCCACCACTCTGCTGTTGGACCTCACTTGT
AGCCCCGCGGGACACATCAAGTTCAGGTCACTCACACACCCAGCGTAGCT
GCATTTCCCGGAGCCTCTGATGGGCAAAATCGACATTGCGATGTTGTAAC
CGTCGACCAGGCTCACGTCGTAGAAGTCCTGCTGCTGCCCCAGCGTGATT
TCGGCGAGGGTGGCCGGCGGGCTGCCGCCTATGCCGTTGCAGAAGAGCGA
TCCGCCGCAGTCCCCGGTGGCGCAGCGGCCCCGGCCTGAGGCGTCGAACC
TGCATCCATGGCGACCCCAGAAGCGCCCGGACCAGAGGGGCGGTAGGCGT
ATGGTGTAGGCCTTGTTTGGTGGGAGCTTGAAGCCGCCACGTGCCAGTAG
TGGCTTGCCTGCGCTCGCTTGTATTCCGGGCCAAACTGGGTGCTCGCATT
TGTTGAATAATGTGATTGTTGTAGCTTTGATATTGTGAGAGAAGAGGACG
ATGGTGGTGAGCAAGAGAGCGAGTAGAGATCTAAGCAGCATTGTTACTGC
CATG
back to top