CV998097

Overview
NameCV998097
Unique NameCV998097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CV998097 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.735e-26
Identity = 95/243 (39.09%), Postives = 111/243 (45.68%), Query Frame = -2 
Query:  289 SKLTDRVISVEYAVRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRDR---------------GSPENGHGSSPSPYRKGK-----PSPNNGRGPSRS--PYE--RERPSPENXXXXXXXXXXXXXXXPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 942
            SKL D+VISVEYAV+DDD R NG+                                                 R RSPSPYRR+RGSPDYGR +S   +K+ER +  +GRG  S SPY+R R                SPENG   + SP RKG+     P P   R  SRS  PYE  RE  SP                 P+NG+V SP  + E     GYDGADSPI E   SRSPPAE+
Sbjct:  153 SKLMDKVISVEYAVKDDDSRGNGYSPERRRDRSPDR-------------------------------------RRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSP-RKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRES-PSRSPPAEE 356
[Close]
BLAST of CV998097 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 7.447e-25
Identity = 85/234 (36.32%), Postives = 110/234 (47.01%), Query Frame = -2 
Query:  289 SKLTDRVISVEYAVRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXPDXXXXXXXXXXXXXXXXPDYGRVRSPSPYRRDRGSPDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRRD-RGSPENGHG--SSPSPYR--------KGKPSPNNGR---GPSRSPYERERP-SPENXXXXXXXXXXXXXXXPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 942
            SKL D+VISVEYAV+DDD R NGH                                                 R RSPSPY+R+RGSPDYGR +S  + Y+KER +  +GR  S SPY++  RGSPE G     + SP R        K   SPNN R    P+ SP+++E P +                  P+NG+V SP S+       GYDGA+SP+ +    RSPPA++
Sbjct:  154 SKLMDKVISVEYAVKDDDARGNGHSPERRRDRSPER-------------------------------------RRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 350
The following BLAST results are available for this feature:
BLAST of CV998097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSP41_ARATH6.735e-2639.09Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP40_ARATH7.447e-2536.32Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_MV-3_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC39_G05_035, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998097 ID=CV998097; Name=CV998097; organism=Citrus sinensis; type=EST; length=943bp
TTTTTTTTTTTTTTTTTGAAGTTTTCAGCAGAGACATGATAAAATGCATT
AACAAAGTGAAATTAAGGTGATGCATAACAACATACTCCATACAAATGGC
TACTTAGTTCATTACCAACAATTAAAATCGTTCTTGAAGTTTGAGCAGAG
ACAGCTCTAAACTAGAAACTGAACTAATTAGGACCTACATCACAAGTTCC
AAAGCAGATATTACGATCTAATTGGGATGGTTGCTGTAAAATGGCCTGGT
CAGTTCTGTGACCAGGGCTCCTCTGGGAACCATGTTCAGTCCTCGGCTGG
AGGTGAACGACTGCGGTATCTCTCATTGATAGGGCTGTCAGCTCCATCAT
AACCAGGGCTATCCCTAGGTTCAGGCATTGAATTTGGACTGGGAACACGA
CCATTGTCAGGGCTAGGCCTCTCTCTTCTATAGGGACTTCGGCTGCCTCC
ACGACCATTTTCAGGACTAGGCCTCTCTCTTTCATATGGACTGCGGCTGG
GGCCACGACCATTGTTAGGACTAGGTTTCCCCTTACGATAAGGACTAGGA
CTGGATCCATGACCATTCTCAGGACTACCTCTGTCCCTCCGATAAGGACT
ACGGCTAGGGCCTCGACCATGACCAATAGCAGCTCTCTCTTTCTTGTAAG
GACTGCGGCTGGAGTTACGACCGTAATCAGGGCTACCCCGATCCCTCCTA
TAGGGACTTGGGCTTCTAACACGACCATAATCAGGGCTACCCCTCTCTCT
CCTGTAAGGACTTCGGCTAGAGCCACGGCCATAATCAGGACTACCTCTTT
CCCTTCTATAGGGACTTGGAGATCTCCTCCTACCCCTATCTGGTGACCTA
TCACGATTTCTATCAGGACTGTGTCCATTTCTCCGGTCATCGTCATCACG
AACTGCATATTCCACTGAAATAACTCGATCCGTCAACTTGCTC
back to top