CV998096

Overview
NameCV998096
Unique NameCV998096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3561 contig Csv1_Contig3561:1..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998096 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 8.849e-52
Identity = 102/142 (71.83%), Postives = 114/142 (80.28%), Query Frame = 1
Query:  481 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 906
            GFAF+YM+DERDAEDAIR LDR E+GR GRRLRVEWTK++                +  RPSKTLFVINFD  +TRTRDLERHFEPYGKI++VRIRRNFAF+QYE QEDATRALDATN SKL D+VISVEYAV+DDD R NG
Sbjct:   36 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDRGGAGRSGGSRRSS--SGLRPSKTLFVINFDAQNTRTRDLERHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDATNSSKLMDKVISVEYAVKDDDSRGNG 175          

HSP 2 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 31/39 (79.49%), Postives = 39/39 (100.00%), Query Frame = 3
Query:   51 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFSW 167
            M+P+FCGNFEYDAR+SDLERLFR+YGKV+RVDMK+GF++
Sbjct:    1 MKPVFCGNFEYDARESDLERLFRKYGKVERVDMKAGFAF 39          
BLAST of CV998096 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.156e-51
Identity = 103/142 (72.54%), Postives = 115/142 (80.99%), Query Frame = 1
Query:  481 GFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDRRNG 906
            GFAF+YM+DERDAEDAIR LDR EFGRKGRRLRVEWTK E                ++ RPSKTLFVINFD  +TRTRDLE+HFEPYGKI++VRIRRNFAF+QYE QEDATRALDA+N SKL D+VISVEYAV+DDD R NG
Sbjct:   36 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSERGGDKRSGGGSRRSS-SSMRPSKTLFVINFDADNTRTRDLEKHFEPYGKIVNVRIRRNFAFIQYEAQEDATRALDASNNSKLMDKVISVEYAVKDDDARGNG 176          

HSP 2 Score: 73.9442 bits (180), Expect = 1.374e-12
Identity = 30/39 (76.92%), Postives = 38/39 (97.44%), Query Frame = 3
Query:   51 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFSW 167
            M+P+FCGNFEYDAR+ DLERLFR+YGKV+RVDMK+GF++
Sbjct:    1 MKPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAGFAF 39          
BLAST of CV998096 vs. ExPASy Swiss-Prot
Match: RSP31_ARATH (Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana GN=RSP31 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 4.867e-42
Identity = 85/147 (57.82%), Postives = 107/147 (72.79%), Query Frame = 1
Query:  472 ISEGFAFIYMDDERDAEDAIRGLDRTEFGRKGRRLRVEWTKHEXXXXXXXXXXXXXXXXTNTRPSKTLFVINFDPYHTRTRDLERHFEPYGKIISVRIRRNFAFVQYEVQEDATRALDATNMSKLTDRVISVEYAVRDDDDR--RNG 906
            +  G+AF+Y +DERDAEDAIR LD   FG + RRL VEW K E                +N +P+KTLFVINFDP  T+  D+E+HFEPYGK+ +VRIRRNF+FVQ+E QEDAT+AL+AT  SK+ DRV+SVEYA++DDD+R  RNG
Sbjct:   33 MKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAP-----SNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRIRRNFSFVQFETQEDATKALEATQRSKILDRVVSVEYALKDDDERDDRNG 174          

HSP 2 Score: 68.5514 bits (166), Expect = 5.772e-11
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 3
Query:   51 MRPIFCGNFEYDARQSDLERLFRRYGKVDRVDMKSGFSW 167
            MRP+F GNFEY+ RQSDLERLF +YG+VDRVDMKSG+++
Sbjct:    1 MRPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSGYAF 39          
The following BLAST results are available for this feature:
BLAST of CV998096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RSP41_ARATH8.849e-5271.83Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP40_ARATH1.156e-5172.54Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
RSP31_ARATH4.867e-4257.82Arginine/serine-rich-splicing factor RSP31 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_MV-3_T3 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC09_A02_016, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998096 ID=CV998096; Name=CV998096; organism=Citrus sinensis; type=EST; length=907bp
GTTTTCGAAGATCACATTCACAGCTATCAATCGCCGCTTTCGAAGCTATG
ATGAGGCCTATCTTCTGTGGGAACTTTGAGTATGATGCTCGTCAGTCTGA
TCTGGAGCGGCTTTTCAGAAGATATGGAAAAGTTGATAGAGTGGATATGA
AGTCTGGATTTTCTTGGGATATCCATACTCCTGGCTAATGGATGCACACA
TCAGAATTTCATTAACTGCCTGTGACGAGCATCCTCTTCTTGTTCTCAAG
AAGAGTCACTCTCATCCGGAAAGGCACAACCATCCCACATTTTTATTGCC
TTTTCATTCCTCATGACTTTTGCCCAGCCTCCAATTTCAGACATGTTTCA
AGCTAGAAACATTGCCGACCTCACAGCAGAGGCAACAGAATAGATGGGGA
AGGCACTCTATCCATTGACCTCCCATGAGACATCCACTTTTGGAATCTTG
TTCCTTGACATCACTTAATACATCTCAGAAGGATTTGCATTTATCTATAT
GGATGATGAGAGAGATGCTGAGGATGCAATTCGAGGGCTCGATCGAACTG
AATTCGGTCGTAAGGGACGCAGACTTCGTGTTGAATGGACAAAGCATGAA
CGAGGAATCAGAAGGCCTGGGGGGGGTTCAAGCGCAAGAAGACCTTCAAC
AAATACAAGACCTTCAAAGACCTTGTTTGTCATTAATTTTGATCCATATC
ATACGCGCACCAGGGACTTAGAAAGGCACTTTGAGCCATATGGAAAAATA
ATAAGTGTTAGGATCAGAAGGAATTTTGCATTTGTTCAATATGAAGTGCA
GGAGGATGCCACCAGAGCATTGGATGCTACAAACATGAGCAAGTTGACGG
ATCGAGTTATTTCAGTGGAATATGCAGTTCGTGATGACGATGACCGGAGA
AATGGAC
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