CV998088

Overview
NameCV998088
Unique NameCV998088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length971
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12042 contig Csv1_Contig12042:1541..2511. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV998088 vs. ExPASy Swiss-Prot
Match: EBF2_ARATH (EIN3-binding F-box protein 2 OS=Arabidopsis thaliana GN=EBF2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.059e-16
Identity = 36/60 (60.00%), Postives = 50/60 (83.33%), Query Frame = -3 
Query:  787 NYLNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVL 966
            N+LNLQ+LS+ GCS ++DKS   ++KLG+TLLGLN+Q C  IS+++VD L+E LWRCD+L
Sbjct:  563 NHLNLQVLSIGGCSSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTLLENLWRCDIL 622
[Close]
BLAST of CV998088 vs. ExPASy Swiss-Prot
Match: EBF1_ARATH (EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.305e-15
Identity = 39/59 (66.10%), Postives = 50/59 (84.75%), Query Frame = -3 
Query:  784 LNLQILSLSGCSMVSDKSLGALRKLGQTLLGLNLQHCNAISTNSVDMLVEQLWRCDVLS 960
            L LQILS++GCSMV+DKSL A+  LG TLLGLNLQ C +IS ++VD LVE+L++CD+LS
Sbjct:  570 LKLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISNSTVDFLVERLYKCDILS 628
The following BLAST results are available for this feature:
BLAST of CV998088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
EBF2_ARATH5.059e-1660.00EIN3-binding F-box protein 2 OS=Arabidopsis thalia... [more]
EBF1_ARATH7.305e-1566.10EIN3-binding F-box protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_D-4_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC46_F06_038, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998088 ID=CV998088; Name=CV998088; organism=Citrus sinensis; type=EST; length=971bp
TTTTTTGAAGATAATCTTTATTTATTATAAAAAGCATTACAAGATAATAA
TATTACATCACAAAGGGCGAACCGATTTCATTACACAATAAAGTCATTGC
AAAGAGTACAGTCCATGAATAAATGAAGCCTGCAAAACCAGGGCCTGGTG
AATAAAAAACAACCCTCGGGTTGTCAAGGCAGACCATATAACTTGCTGCC
AAGGCCAAGACCCCGTCGACACAAGGCATCAAAAATTCTGAACCGTTAAA
AGCAACGACAACAAAGTGACTCTCATGACTTTTTAATCCACCCTTTGAGA
AAAACATAGACCCAACATGTGGCATCAAAAACGTGGAACACTTGGTAAAC
AGACTCGAAATTTGCAAAGACAAAAGCTTAGTCTCACCATAGACTATAGC
TAAAACACTAGGTACGGACACCCAGTAGCACAAAACCATTAACAGCGGAG
GGAATACCCTAGAAACATAACCCAGTAGCTGTATTCTCAGGAAAATATGG
CCTTAAAGTGACACCCGTAATTGGGCATCAAAAAGCTGTAACAGATTTTC
TTTCATTCGGAAACCTGCAAAAAAGGTAGAGGCCATATTCACCCTGGAAA
AAGAAACCGAGCACTTGAAGACTGAAGACCCATAGCAGATGGACCCAAAA
ACTAAACAAACTGCTGCTGCTACTCACAGATGCTGACTAGAAAATTCTGA
GACTTCCTGATATGTTCATCCCCATCCTTTGTATCAGTGCTACATATTAT
CGAATGGGGTTTTGTCGAATGCTTTGCAGCTTATGAGAGGACATCACACC
TCCATAACTGCTCCACAAGCATGTCAACAGAGTTGGTGCTGATTGCATTG
CAGTGCTGGAGGTTCAAACCCAGAAGGGTCTGACCCAACTTTCTTAGGGC
ACCCAAGCTCTTGTCTGAAACCATTGAGCAACCTGACAGCGAAAGAATCT
GCAGATTGAGATAGTTTCCAT
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