CV998065

Overview
NameCV998065
Unique NameCV998065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:656..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.670e-28
Identity = 48/84 (57.14%), Postives = 61/84 (72.62%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH VII  W PS++D  A R+PGYG+ TNIINGG+ECGKGWN+ V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  241 CHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          

HSP 2 Score: 30.8018 bits (68), Expect = 4.670e-28
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A WFWMT Q PKPS
Sbjct:  227 AFWFWMTPQSPKPS 240          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.537e-27
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH VII  W PS++D  A R  GYG+ TNIINGG+ECGKGWN+ V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  219 CHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          

HSP 2 Score: 30.8018 bits (68), Expect = 6.537e-27
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A WFWMT Q PKPS
Sbjct:  205 AFWFWMTPQSPKPS 218          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 8.495e-27
Identity = 47/84 (55.95%), Postives = 62/84 (73.81%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH+VII  W+PSA D  A+RLPG+G+ TNIINGG+ECG+G +S V +RIGF+  +C   G+ PGDNLDC NQ  +G  L+  +M
Sbjct:  246 CHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          

HSP 2 Score: 31.5722 bits (70), Expect = 8.495e-27
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A+WFWMT Q PKPS
Sbjct:  232 ALWFWMTPQSPKPS 245          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.549e-27
Identity = 45/76 (59.21%), Postives = 58/76 (76.32%), Query Frame = -1
Query:  204 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYG 431
            CH+V+   W+PSA D  A RLPGYG+ TN++NGG+ECGKG N  VA+R+GFF  +CG  G+  G+NLDCYNQ P+G
Sbjct:  168 CHDVLTGRWQPSAADTAAGRLPGYGVLTNLLNGGLECGKGPNPQVADRLGFFRRYCGLLGVGTGNNLDCYNQRPFG 243          

HSP 2 Score: 31.5722 bits (70), Expect = 8.549e-27
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A+WFWMT Q PKPS
Sbjct:  154 ALWFWMTPQAPKPS 167          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.105e-26
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  192 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLM 431
            CH VI  +W+PS  D  A RLPGYG+ TNIINGG+ECG+G +  VA+RIGF+  +C  FG+ PG NLDCYNQ  +   L+
Sbjct:  252 CHAVIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSFVNGLL 331          

HSP 2 Score: 37.3502 bits (85), Expect = 1.105e-26
Identity = 14/14 (100.00%), Postives = 14/14 (100.00%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            AIWFWMTAQPPKPS
Sbjct:  238 AIWFWMTAQPPKPS 251          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.004e-26
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH+VII  W PS +D  A R+PG+GL TNIINGG+ECG+GWN+ V +RIGF+  +C   G+  G+NLDCYNQ  Y       SM
Sbjct:  238 CHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          

HSP 2 Score: 30.8018 bits (68), Expect = 7.004e-26
Identity = 11/14 (78.57%), Postives = 11/14 (78.57%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A WFWMT Q PKPS
Sbjct:  224 AFWFWMTPQSPKPS 237          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 9.115e-26
Identity = 48/84 (57.14%), Postives = 60/84 (71.43%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH+VI   W PS+ D  A RLPGYG  TNIINGG+ECG+G +S V +RIGF+  +C  FGI  GDNLDCY+Q P+G +L   S+
Sbjct:  233 CHDVITGGWTPSSADRAAGRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFYKRYCDIFGIGYGDNLDCYSQRPFGSSLPLSSI 316          

HSP 2 Score: 31.5722 bits (70), Expect = 9.115e-26
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A+WFWMT Q PKPS
Sbjct:  219 ALWFWMTPQSPKPS 232          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.187e-25
Identity = 45/84 (53.57%), Postives = 60/84 (71.43%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH+VI   W+PS  D  A+R+PG+G+ TNIINGG+ECG G +S V +RIGF+  +CG  G+ PGDNLDC NQ  +G  L+  +M
Sbjct:  235 CHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          

HSP 2 Score: 32.3426 bits (72), Expect = 1.187e-25
Identity = 12/14 (85.71%), Postives = 12/14 (85.71%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            AIWFWMT Q PKPS
Sbjct:  221 AIWFWMTPQSPKPS 234          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.543e-25
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = -1
Query:  180 CHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM 431
            CH+VI   W PSA D  A+RLPGYG+ TNIINGG+ECG G ++ V +RIGF+  +C   G+ PGDN+DC NQ  +   L+ ++M
Sbjct:  251 CHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          

HSP 2 Score: 34.2686 bits (77), Expect = 1.543e-25
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            AIWFWMTAQ PKPS
Sbjct:  237 AIWFWMTAQSPKPS 250          
BLAST of CV998065 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.544e-25
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = -1
Query:  171 HEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDCYNQGPYGPNLMAQSM*SS 428
            H+VI   W PS+ DV A RLPGYG  TNIINGG+ECG+G +S V +RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  242 HDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          

HSP 2 Score: 33.4982 bits (75), Expect = 1.544e-25
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = -3
Query:  433 AIWFWMTAQPPKPS 474
            A+WFWMTAQ PKPS
Sbjct:  227 ALWFWMTAQSPKPS 240          
The following BLAST results are available for this feature:
BLAST of CV998065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI1_GOSHI4.670e-2857.14Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI2_GOSHI6.537e-2755.95Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_TOBAC8.495e-2755.95Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHIT_CARPA8.549e-2759.21Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_ARATH1.105e-2656.25Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHI1_THECC7.004e-2654.76Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI2_PEA9.115e-2657.14Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI1_SOLTU1.187e-2553.57Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.543e-2552.38Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIT_PHAVU1.544e-2553.49Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_B-4_T7 Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07-153 Citrus sinensis cDNA clone TC58_B08_062, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV998065 ID=CV998065|Name=CV998065|organism=Citrus sinensis|type=EST|length=476bp
TTTTTTTTTTTTTTGGAGAGACTCATTGATCCATGTTGGATCAGTCTTAT
TTAATTTACCTACAATAAGAGCGTAACAAACTAACAATTTAGTTGTCCAC
CTACAAGTGTGACATCTAAAGTTTTTATTAAGTAGCTTTTATTAAGCTTA
TTTTACTAAAACGTTGATCATGATGATCACATAGATTGTGCCATCAAATT
AGGGCCATAAGGCCCTTGGTTGTAGCAATCAAGATTGTCGCCAGGCTGAA
TCCCAAACTTGCCACAGAAAGTGGTAAAGAACCCAATACGGTTAGCTACA
AAGCTATTCCAACCTTTGCCACATTCAATTCCACCGTTGATTATATTTGT
GGTTAGACCGTATCCCGGAAGCCGGCTGGCGTTTACGTCATTTGCTGATG
GTTTCCATTCGTCGATAATGACTTCGTGGCAACGATGGCTTTGGTGGCTG
TGCAGTCATCCAGAACCAGATTGCCT
back to top