EY665710

Overview
NameEY665710
Unique NameEY665710
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665710_ssr269 microsatellite EY665710_ssr269:269..280. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.080e-47
Identity = 90/131 (68.70%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.247e-47
Identity = 89/131 (67.94%), Postives = 104/131 (79.39%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY EI KEVSSYLKKVGYNP K+PF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKVPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.208e-46
Identity = 89/131 (67.94%), Postives = 105/131 (80.15%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALL+F LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 89/131 (67.94%), Postives = 103/131 (78.63%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ RY EI KEVSSYLKKVGYNP KIPF+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.994e-46
Identity = 89/131 (67.94%), Postives = 104/131 (79.39%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ST   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP KI F+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIHFVPISGFEGDNMIERSTNLDWYKGPTL 216
[Close]
BLAST of EY665710 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.022e-45
Identity = 88/131 (67.18%), Postives = 104/131 (79.39%), Query Frame = 2 
Query:  335 YCSEIEAERLPGYMKNMITGACLDDCLALIINSTAAEYDAGISTDGQTSENALLAFALGEKQMICCCNTMDTTTPIDSEARYNEIGKEVSSYLKKVGYNPQKIPFMPISGFEGGNLIDKATNLDWYKGPTL 727
            YC+ I+A     ++KNMITG    DC  LII+ T   ++AGIS DGQT E+ALLAF LG KQMICCCN MD TTP  S+ARY+EI KEVSSYLKKVGYNP+KI F+PISGFEG N+I+++TNLDWYKGPTL
Sbjct:   86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIAFVPISGFEGDNMIERSTNLDWYKGPTL 216
The following BLAST results are available for this feature:
BLAST of EY665710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 178
Match NameE-valueIdentityDescription
EF1A_TOBAC5.421e-4768.70Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC5.421e-4768.70Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_ORYSJ5.421e-4768.70Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MANES5.421e-4768.70Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_ARATH7.080e-4768.70Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_WHEAT9.247e-4767.94Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_SOYBN1.208e-4667.94Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_VICFA2.060e-4667.94Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_MAIZE5.994e-4667.94Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A1_DAUCA1.022e-4567.18Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-092-G01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665710 ID=EY665710; Name=EY665710; organism=Citrus sinensis; type=EST; length=806bp
ACTATAAATGGCGGACGCGGTCCACACATCTTCAATCTCATGCTCATCAA
CTAATATCATTTCTCTCAATACTAACACAACGGCTCTAGATTCTCTGCAT
TTACGCTCTCTCTCCGCTTTCCATTGCGACTAATCAACCTGTTACACGTG
TGCACCCCTCCTCTCCAAGAATACTCTCTCTCGATCGACAAGGCTTCATA
AGTCGTAGACGAAACAAGGGGGGAGGACCAGATCTGGGTCGCCGATGTCC
GCCGGGTCCAATCATTCCATGATGATGATGACCACTCTATTGGCGTTGCA
ATCGATTAGGATAATAACAAGCACCTTGGACGACTACTGCTCCGAAATTG
AGGCTGAACGACTTCCAGGATATATGAAAAACATGATAACGGGTGCTTGC
CTCGATGACTGTCTTGCTCTGATCATTAACTCTACCGCTGCTGAATATGA
TGCTGGTATCTCCACTGATGGACAGACATCAGAGAATGCTTTGCTTGCTT
TCGCCCTTGGTGAGAAGCAGATGATTTGCTGCTGTAACACGATGGACACC
ACCACCCCCATTGATTCGGAGGCTAGGTACAATGAAATTGGGAAGGAGGT
CTCTTCCTACCTGAAGAAAGTTGGATACAACCCCCAAAAAATCCCTTTCA
TGCCCATCTCTGGTTTCGAGGGGGGGAACTTGATTGATAAGGCTACCAAC
CTTGACTGGTACAAGGGACCCACCCTGGAGGGGCGCCCTTGAAAATTTCA
TTAACCCTAAAAGGGCCTCAAAAAAAACCCTTTCGGGTGGCTCCTCAAAG
AAGGGT
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