CX043316

Overview
NameCX043316
Unique NameCX043316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length287
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7406 contig Csv1_Contig7406:35..321. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: XYL1_ARATH (Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.425e-48
Identity = 84/95 (88.42%), Postives = 90/95 (94.74%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G YAAHWTGDN+GTW+ L+ SISTMLNFGIFGVPMVGSDICGFYP PTEELCNRWIEVGAFYPFS DHANYYSPRQELYQW++VA+SARNALGMR
Sbjct:  554 GQYAAHWTGDNQGTWQSLQVSISTMLNFGIFGVPMVGSDICGFYPQPTEELCNRWIEVGAFYPFSRDHANYYSPRQELYQWDTVADSARNALGMR 648          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGLU_ORYSJ (Probable alpha-glucosidase Os06g0675700 OS=Oryza sativa subsp. japonica GN=Os06g0675700 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.476e-35
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G Y AHWTGDN  TWEDL YSI+TML+FG+FG+PM+G+DICGF    TEELC+RWI++GAFYPFS DH+   + R+ELY WESVA SAR ALG+R
Sbjct:  531 GRYTAHWTGDNAATWEDLHYSINTMLSFGLFGIPMIGADICGFGGNTTEELCSRWIQLGAFYPFSRDHSAIGTVRRELYLWESVARSARKALGLR 625          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGLU_SPIOL (Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.636e-34
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G Y AHWTGDN  TW DL YSI +ML+FG+FG+PMVG+DICGF    TEELC RWI++GAFYPFS DH++  +  QELY+WESVA SAR  LG+R
Sbjct:  555 GKYTAHWTGDNAATWNDLVYSIPSMLDFGLFGIPMVGADICGFLGNTTEELCRRWIQLGAFYPFSRDHSSLGTTYQELYRWESVAASARKVLGLR 649          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGLU_BETVU (Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.636e-34
Identity = 63/95 (66.32%), Postives = 75/95 (78.95%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G Y AHWTGDN   W+DL+YSI TMLNFG+FG+PM+G+DICGF  + TEELC RWI++GAFYPFS DH+   +  QELY WESVA SAR  LG+R
Sbjct:  559 GKYTAHWTGDNAARWDDLQYSIPTMLNFGLFGMPMIGADICGFAESTTEELCCRWIQLGAFYPFSRDHSARDTTHQELYLWESVAASARTVLGLR 653          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGLU_HORVU (Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.382e-33
Identity = 61/95 (64.21%), Postives = 76/95 (80.00%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G Y A+WTGDN  TW DL+YSI+TML+FG+FG+PM+G+DICGF    TEELC RWI++GAFYPFS DH+  ++ R+ELY W SVA S R ALG+R
Sbjct:  525 GRYTAYWTGDNAATWGDLRYSINTMLSFGLFGMPMIGADICGFNGNTTEELCGRWIQLGAFYPFSRDHSAIFTVRRELYLWPSVAASGRKALGLR 619          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: YAJ1_SCHPO (Uncharacterized family 31 glucosidase C30D11.01c OS=Schizosaccharomyces pombe GN=SPAC30D11.01c PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.455e-24
Identity = 48/95 (50.53%), Postives = 67/95 (70.53%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G YAAHW GDNK  W D+  SIS++L F + G+PMVG+D+CG+     EELC RW+ +GAF PF  +H +  S  QE ++W SVAE++R+A+ +R
Sbjct:  663 GRYAAHWLGDNKSQWSDMVSSISSILTFNLLGIPMVGADVCGYNGNTDEELCARWMALGAFLPFYRNHNSLGSIPQEPFRWASVAEASRSAIEIR 757          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGLU_SCHPO (Alpha-glucosidase OS=Schizosaccharomyces pombe GN=agl1 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 4.455e-24
Identity = 48/95 (50.53%), Postives = 64/95 (67.37%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G Y AHW GDN   W ++ +SIS M+ F + G+PMVG+D+CGF     EELC+RW+ +GAF PF  +H N Y   QE Y W SVAE++R A+ +R
Sbjct:  638 GVYGAHWLGDNHSLWSNMFFSISGMIVFNMMGIPMVGADVCGFLGDSDEELCSRWMAMGAFSPFYRNHNNIYQISQEPYTWSSVAEASRRAMYIR 732          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: AGLU_MUCJA (Alpha-glucosidase OS=Mucor javanicus PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.455e-24
Identity = 50/95 (52.63%), Postives = 63/95 (66.32%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G    HWTGDN   W  LK SI+ +LNF +FGV   G+D+CGF    TEELC RW+E+GAFYPF+ +H N  +  QE Y WES AE++R A+  R
Sbjct:  558 GKSVGHWTGDNHSFWPYLKNSIANILNFQMFGVSYSGADVCGFNSDTTEELCTRWMEIGAFYPFARNHNNNAAKDQEPYLWESTAEASRIAINTR 652          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: YFZB_SCHPO (Uncharacterized family 31 glucosidase C1039.11c OS=Schizosaccharomyces pombe GN=SPAC1039.11c PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.296e-23
Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQWESVAESARNALGMR 287
            G YAAHW GDN   W ++ +SI   L F + G+PMVG+D+CGF     EELC+RW+ +GAF PF  +H +  S  QE Y+WESVAES+R A+ +R
Sbjct:  660 GKYAAHWLGDNYSLWSNMIFSIPGALTFNMVGLPMVGADVCGFMGNTDEELCSRWMALGAFLPFYRNHNSLGSISQEPYRWESVAESSRCAMNIR 754          
BLAST of CX043316 vs. ExPASy Swiss-Prot
Match: SUIS_RABIT (Sucrase-isomaltase, intestinal OS=Oryctolagus cuniculus GN=SI PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 1.097e-22
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDH 206
            G +AAHW GDN  TWE +++SI+ ML FG+FG+P+VG+DICGF    TEELC RW+++GAFYPFS +H
Sbjct:  595 GRHAAHWLGDNTATWEQMEWSITGMLEFGLFGMPLVGADICGFLAETTEELCRRWMQLGAFYPFSRNH 662          

HSP 2 Score: 92.0485 bits (227), Expect = 9.614e-19
Identity = 39/96 (40.62%), Postives = 58/96 (60.42%), Query Frame = 3
Query:    3 GHYAAHWTGDNKGTWEDLKYSISTMLNFGIFGVPMVGSDICGFYPAPTEELCNRWIEVGAFYPFSWDHANYYSPRQELYQW-ESVAESARNALGMR 287
            G +A HW GDN   W+++  SI  M+ F +FG+   G+DICGF+      LC RW ++GAFYPF+ +H   ++ RQ+   W ++  E  RN L +R
Sbjct: 1491 GRWAGHWLGDNYARWDNMDKSIIGMMEFSLFGISYTGADICGFFNDSEYHLCTRWTQLGAFYPFARNHNIQFTRRQDPVSWNQTFVEMTRNVLNIR 1586          
The following BLAST results are available for this feature:
BLAST of CX043316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
XYL1_ARATH4.425e-4888.42Alpha-xylosidase OS=Arabidopsis thaliana GN=XYL1 P... [more]
AGLU_ORYSJ1.476e-3568.42Probable alpha-glucosidase Os06g0675700 OS=Oryza s... [more]
AGLU_SPIOL3.636e-3466.32Alpha-glucosidase OS=Spinacia oleracea PE=1 SV=1[more]
AGLU_BETVU3.636e-3466.32Alpha-glucosidase OS=Beta vulgaris PE=1 SV=1[more]
AGLU_HORVU1.382e-3364.21Alpha-glucosidase OS=Hordeum vulgare PE=2 SV=1[more]
YAJ1_SCHPO4.455e-2450.53Uncharacterized family 31 glucosidase C30D11.01c O... [more]
AGLU_SCHPO4.455e-2450.53Alpha-glucosidase OS=Schizosaccharomyces pombe GN=... [more]
AGLU_MUCJA4.455e-2452.63Alpha-glucosidase OS=Mucor javanicus PE=1 SV=1[more]
YFZB_SCHPO1.296e-2351.58Uncharacterized family 31 glucosidase C1039.11c OS... [more]
SUIS_RABIT1.097e-2261.76Sucrase-isomaltase, intestinal OS=Oryctolagus cuni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10C06_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10C06-F12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043316 ID=CX043316; Name=CX043316; organism=Citrus sinensis; type=EST; length=287bp
CTGGTCATTATGCTGCACACTGGACGGGTGATAATAAGGGAACATGGGAA
GATCTAAAGTATTCTATTTCAACCATGCTGAACTTCGGCATATTTGGGGT
TCCAATGGTTGGTTCCGATATATGTGGGTTCTATCCTGCCCCAACAGAAG
AGCTTTGTAACCGATGGATAGAAGTAGGTGCATTCTATCCGTTCTCATGG
GATCATGCAAACTACTACTCCCCAAGACAGGAGCTTTATCAGTGGGAGTC
AGTAGCAGAGTCCGCCCGAAATGCTCTGGGTATGAGG
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