CX043303

Overview
NameCX043303
Unique NameCX043303
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043303_ssr300 microsatellite CX043303_ssr300:300..311. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10133 contig Csv1_Contig10133:26..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CX043303 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.412e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 3 
Query:   21 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 248
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CX043303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
UBIQ_WHEAT6.412e-36100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN6.412e-36100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU6.412e-36100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC6.412e-36100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR6.412e-36100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA6.412e-36100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ6.412e-36100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY6.412e-36100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE6.412e-36100.00Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO6.412e-36100.00Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10B09_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B09-D18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043303 ID=CX043303; Name=CX043303; organism=Citrus sinensis; type=EST; length=642bp
GTCTCTCCTCATCTGCAGCCATGCAGATCTTCGTGAAAACCCTAACGGGA
AAGACCATAACCCTAGAGGTCGAATCATCGGACACCATCGACAATGTCAA
GGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAGCGTCTCA
TCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC
ATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCTCCGTGGTGGCGC
GAAGAAGCGTAAGAAGAAGACCTACACCAAGCCGAAAAAGATCAAGCACA
AGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTACAAGGTCGATGAT
TCTGGAAAGGTCCAGAGGCTGAGGAAGGAGTGTCCGAATGCTGAGTGTGG
AGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACTACTGCGGCAAGT
GTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGATTGATCGAGATTA
GGTGGTTGTTTTGCTATTTTTAATTAGTATTAATTACTATGGTTTTTGTG
GTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACTATATACTTGTTT
GCTGGAGCGTTTTAATTAAATGGTTATCTGTTTTAAATTTTA
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