CX043300

Overview
NameCX043300
Unique NameCX043300
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10200 contig Csv1_Contig10200:1972..2808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 4.752e-102
Identity = 175/199 (87.94%), Postives = 189/199 (94.97%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            V GDRRKESKDLEE+AEMKKMY LI+ YKLNGQFRWISSQMNRVRNGELYR ICDT+GAFVQPA+YEAFGLTVVEAMTCGLPTFATC GGPAEIIV+GKSG+HIDPYHG++AA++LVDFFEKCK DP++WDKIS  GL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDR ESRRYLEMFYALKYRKLAESVPLA E
Sbjct:  607 VAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKLDPTHWDKISKAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAAE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 370.163 bits (949), Expect = 8.105e-102
Identity = 174/197 (88.32%), Postives = 189/197 (95.94%), Query Frame = -3
Query:  239 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLA 829
            VGGDRRKESKD EE+AEMKKMY LI++YKLNGQFRWISSQM+RVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV+GKSG+HIDPYHG+QAA+ L DFF KCK DPS+WD+IS GGL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDRLE+RRYLEMFYALKYR LA++VPLA
Sbjct:  609 VGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLA 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 2.358e-101
Identity = 177/199 (88.94%), Postives = 190/199 (95.48%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            V GDRRKESKDLEE+AEMKKMY LI+ YKLNGQFRWISSQMNRVRNGELYR ICDTKGAFVQPA+YEAFGLTVVEAM  GLPTFAT  GGPAEIIV+GKSG+HIDPYHG++AA++LV+FFEK KADPS+WDKISLGGL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE
Sbjct:  607 VAGDRRKESKDLEEKAEMKKMYELIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISLGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 4.023e-101
Identity = 176/199 (88.44%), Postives = 189/199 (94.97%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            V GDRRKESKDLEE+AEMKKMYSLI+ YKLNGQFRWISSQMNRVRNGELYR I DTKGAFVQPA+YEAFGLTVVEAMTCGLPTFATC GGPAEIIV+GKSG+HIDPYHG++AA++LV+FFEK K DPS+WDKIS  GL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDR ESRRYLEMFYALKYRKLAESVPLAVE
Sbjct:  607 VAGDRRKESKDLEEKAEMKKMYSLIETYKLNGQFRWISSQMNRVRNGELYRVIADTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 365.54 bits (937), Expect = 1.996e-100
Identity = 175/197 (88.83%), Postives = 183/197 (92.89%), Query Frame = -3
Query:  239 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLA 829
            VGGDRRKESKDLEEQA+MKKMY LID YKLNGQFRWISSQMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+GKSG+HIDPYHGEQ AE+LV+FFEKCK DPS WD IS GGLKRI+EKYTW+IYS+RLLTL GVYGFWKHVS LDRLE RRYLEMFYALKYRKLAESVPLA
Sbjct:  609 VGGDRRKESKDLEEQAQMKKMYELIDTYKLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATLHGGPAEIIVHGKSGFHIDPYHGEQVAELLVNFFEKCKTDPSQWDAISAGGLKRIQEKYTWQIYSERLLTLAGVYGFWKHVSKLDRLEIRRYLEMFYALKYRKLAESVPLA 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 363.999 bits (933), Expect = 5.808e-100
Identity = 176/199 (88.44%), Postives = 187/199 (93.97%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            V GDRRKESKDLEE AEMKKMY LI+ YKLNGQFRWISSQMNRVRNGELYR ICDTKGAFVQPA+YEAFGLTVVEAM  GLPTFAT  GGPAEIIV+GKSG+HIDPYHG++AA++LV+FFEK KADPS+WDKIS GGL+RIEEKYTW IYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE
Sbjct:  607 VAGDRRKESKDLEEIAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISQGGLQRIEEKYTWTIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.187e-98
Identity = 170/199 (85.43%), Postives = 183/199 (91.96%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            VGGDRRKESKDLEEQAEMKKMY LI+ + LNGQFRWISSQMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+GKSG+HIDPYHGEQAA++L DFFEKCK DPS+W+ IS+GGLKRIEEKYTW+IYS+ LLTL  VYGFWKHVS LDRLE RRYLEMFYALKYRK+AE+VPLA E
Sbjct:  607 VGGDRRKESKDLEEQAEMKKMYELIETHNLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKDPSHWETISMGGLKRIEEKYTWQIYSESLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKYRKMAEAVPLAAE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 9.273e-98
Identity = 169/199 (84.92%), Postives = 183/199 (91.96%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            VGGDRRKESKDLEEQAEMKKMY LI+ + LNGQFRWISSQMNRVRNGELYRYI DTKGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+GKSG+HIDPYHGEQAA++L DFFEKCK +PS+W+ IS GGLKRI+EKYTW+IYS+RLLTL  VYGFWKHVS LDRLE RRYLEMFYALKYRK+AE+VPLA E
Sbjct:  607 VGGDRRKESKDLEEQAEMKKMYELIETHNLNGQFRWISSQMNRVRNGELYRYIADTKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKEPSHWETISTGGLKRIQEKYTWQIYSERLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKYRKMAEAVPLAAE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.481e-95
Identity = 167/199 (83.92%), Postives = 181/199 (90.95%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            VGGDRRKESKDLEEQAEMKKMY LI  + LNGQFRWISSQMNRVRNGELYRYI DT+GAFVQPA YEAFGLTVVEAM+CGLPTFAT +GGPAEIIV+GKSG+ IDPYHGEQAA++L DFFEKCK DPS+W+ IS GGLKRI+EKYTW+IYS RLLTL  VYGFWKHVS LDRLE RRYLEMFYALK+RKLA+ VPLAVE
Sbjct:  607 VGGDRRKESKDLEEQAEMKKMYELIKTHNLNGQFRWISSQMNRVRNGELYRYIADTRGAFVQPAFYEAFGLTVVEAMSCGLPTFATNQGGPAEIIVHGKSGFQIDPYHGEQAADLLADFFEKCKVDPSHWEAISEGGLKRIQEKYTWQIYSDRLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKFRKLAQLVPLAVE 805          
BLAST of CX043300 vs. ExPASy Swiss-Prot
Match: SUS2_DAUCA (Sucrose synthase isoform 2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 5.626e-95
Identity = 164/199 (82.41%), Postives = 182/199 (91.46%), Query Frame = -3
Query:  233 VGGDRRKESKDLEEQAEMKKMYSLIDQYKLNGQFRWISSQMNRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 829
            VGGDRRKESKDLEEQA+MKKMY LID YKLNGQFRWIS+Q NRVRNGELYR I DTKGAFVQPA YEAFGLTV+EAMTCGLPTFAT  GGPAEIIV+G SG+HIDPYHGE+AAE++V+FFE+CK +PS+W+ IS GGLKRI+EKYTW+IYS+RLLTL GVYGFWKHVS LDR+E RRYLEMF ALKYR LAESVPLAV+
Sbjct:  603 VGGDRRKESKDLEEQAQMKKMYGLIDTYKLNGQFRWISAQKNRVRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMTCGLPTFATIHGGPAEIIVHGTSGFHIDPYHGEKAAELIVNFFERCKTEPSHWETISAGGLKRIQEKYTWQIYSERLLTLGGVYGFWKHVSKLDRIEIRRYLEMFCALKYRNLAESVPLAVD 801          
The following BLAST results are available for this feature:
BLAST of CX043300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SUSY_SOYBN4.752e-10287.94Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUS1_ARATH8.105e-10288.32Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUSY_VICFA2.358e-10188.94Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_PHAAU4.023e-10188.44Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUS1_DAUCA1.996e-10088.83Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUSY_MEDSA5.808e-10088.44Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUS1_SOLTU3.187e-9885.43Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUSY_SOLLC9.273e-9884.92Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS2_SOLTU1.481e-9583.92Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]
SUS2_DAUCA5.626e-9582.41Sucrose synthase isoform 2 OS=Daucus carota PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10B08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10B08-D16-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043300 ID=CX043300; Name=CX043300; organism=Citrus sinensis; type=EST; length=831bp
TTTTTTTTTTTTTTTTTAGTCACAAACTATAATGGAATTGATGAGGGTGC
AACACCCAAAGTACAAACAATGCTGAGAAATGCAAAAAGGAAAAAAAAAA
TTGAAAAAAGAAAATTTAAGCCGGTAAAAAAGTCTTTGTCCAATCGCAAT
CCCAGAAGGGACATTATTCTCCACAACTCGAGAAATCTCCACTCGGACCA
ACCACCCTGAGAGCTTCCTCAATGTCCATTTACTCCACAGCCAGAGGAAC
AGATTCAGCCAGCTTACGGTACTTGAGAGCATAAAACATTTCAAGGTATC
GACGGCTCTCAAGCCGATCAAGGTTAGATACATGTTTCCAGAACCCATAG
ACTCCAGTCAGGGTCAGAAGCCTCTGAGAGTAAATTTTCCATGTATACTT
CTCTTCAATACGCTTCAGGCCACCCAGTGATATCTTGTCCCAGTATGAGG
GATCTGCCTTGCACTTCTCAAAGAAGTCAACAAGGATCTCAGCAGCCTGC
TCACCATGGTAAGGATCAATGTGGTAGCCAGATTTCCCGTTAACGATAAT
CTCAGCGGGGCCACCCTTGCAAGTTGCAAATGTTGGCAATCCACAGGTCA
TGGCCTCAACAACAGTCAAGCCAAAGGCCTCATACAGTGCAGGTTGCACA
AAAGCTCCCTTTGTATCACAAATGTACCGGTACAATTCACCGTTCCTGAC
CCGATTCATCTGAGAAGAGATCCATCGGAACTGGCCATTCAATTTGTATT
GATCAATGAGGGAATACATCTTCTTCATTTCAGCCTGTTCTTCCAAGTCC
TTGGACTCCTTTCTCCTATCACCACCCACTA
back to top