CV886738

Overview
NameCV886738
Unique NameCV886738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5720 contig Csv1_Contig5720:236..1159. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV886738 vs. ExPASy Swiss-Prot
Match: ATP7_ARATH (Probable ATP synthase 24 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At2g21870 PE=1 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.740e-79
Identity = 146/198 (73.74%), Postives = 173/198 (87.37%), Query Frame = -2
Query:  330 GDEMLKNIFLDVKKKFETALGVLRKEKITIAPEDPAAVSQYANVMKTVREKADLFSESQRIAYTIETRTAGIPDARTYLLTLKEIRERRGLIDEHGAEAMMMDALDKVEKEIKKPLMRNDKKGMALLTAEFDKINKKLGIRKEDLPKYEEQLELKIAKAQLEELKKDALEAMETQKKREEFKDEEMVEVKSLDVRNFL 923
            GDEMLK +F D+K KF+ A+ +LRKEKIT+ PEDPAAV QYANVMKT+R+KAD+FSESQRI + I+T T  IPDAR YLL L+EIR RRGL DE GAEAMM +AL+KVEK+IKKPL+R+DKKGM LL AEF+K NKKLGIRKEDLPKYEE LEL +AKAQL+ELK DA+EAME+QKK+EEF+DEEM +VKSLD+RNF+
Sbjct:   43 GDEMLKGVFFDIKNKFQAAVDILRKEKITLDPEDPAAVKQYANVMKTIRQKADMFSESQRIKHDIDTETQDIPDARAYLLKLQEIRTRRGLTDELGAEAMMFEALEKVEKDIKKPLLRSDKKGMDLLVAEFEKGNKKLGIRKEDLPKYEENLELSMAKAQLDELKSDAVEAMESQKKKEEFQDEEMPDVKSLDIRNFI 240          
The following BLAST results are available for this feature:
BLAST of CV886738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP7_ARATH1.740e-7973.74Probable ATP synthase 24 kDa subunit, mitochondria... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024H08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T7_H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886738 ID=CV886738; Name=CV886738; organism=Citrus sinensis; type=EST; length=924bp
TTACTCAGTACCTCTTTATTAGAAACTCAATGTGGCAAGCAAATACTTAT
CTTCCAGGGTTATTAGAAACTCAATCCGTCCATTTTTTGCTCGTTTGGGG
AAAAGCGCAATGGGAATACGATCCATTAAATACATTAAAACTGGCTAATA
ACACAGAGGATGAAAGGTGCCGAATGTGCGATTTCATTGCACAAACAGTG
ATAAACGGAATTCCAGTTCTCTCATGGTCTCTTATTCTTAAAATCGAGAG
CAATGATGGTATTTTCCACATTCCAAGTTGCTGATTTCCATTGTGCTCAA
AAACCGTAAAAAGTAAATGCAGAGACTCAAAGGAAGTTTCTGACATCCAA
GGACTTCACTTCGACCATTTCTTCATCCTTGAATTCCTCTCTCTTCTTTT
GTGTTTCCATGGCCTCAAGAGCATCCTTCTTCAATTCTTCCAACTGTGCT
TTGGCAATTTTGAGTTCCAACTGTTCTTCATACTTTGGTAGATCCTCCTT
TCGGATCCCAAGCTTCTTATTAATCTTGTCAAACTCAGCTGTAAGAAGAG
CCATCCCCTTCTTATCATTCCTCATAAGAGGCTTTTTAATTTCTTTTTCA
ACTTTATCCAATGCATCCATCATCATAGCCTCAGCACCATGCTCATCAAT
GAGACCTCTCCTCTCCCTTATTTCCTTGAGCGTCAACAAATATGTTCGAG
CATCTGGAATTCCTGCTGTTCGTGTTTCAATGGTATACGCTATTCGTTGG
GATTCTGAGAACAAGTCTGCCTTCTCTCTGACAGTCTTCATGACATTAGC
ATACTGAGAAACAGCAGCAGGATCCTCTGGAGCAATGGTGATCTTCTCCT
TCCGGAGTACCCCCAAGGCAGTCTCAAATTTCTTCTTAACATCCAAAAAG
ATGTTTTTCAACATCTCATCTCCT
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