CV886648

Overview
NameCV886648
Unique NameCV886648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2018 contig Csv1_Contig2018:81..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_ORYSJ (Transcription elongation factor 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0631100 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.509e-33
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = -2
Query:  230 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDD 442
            +DKLDTVFSCPFCNHG+SVECRIDMKNLIGEA C ICQE+FSTT+ ALTEPIDIYSEWIDECERVNN+EDD
Sbjct:   16 MDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECERVNNVEDD 86          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_ARATH (Transcription elongation factor 1 homolog OS=Arabidopsis thaliana GN=At5g46030 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.196e-30
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = -2
Query:  215 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNNLEDDGAYEK 442
            +DKLDT+FSCPFCNHG+SVEC IDMK+LIG+A C IC+ESFSTTITALTE IDIYSEWIDECERVN  EDD   E+
Sbjct:   16 MDKLDTIFSCPFCNHGSSVECIIDMKHLIGKAACRICEESFSTTITALTEAIDIYSEWIDECERVNTAEDDVVQEE 91          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELF1_YEAST (Transcription elongation factor 1 OS=Saccharomyces cerevisiae GN=ELF1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.676e-16
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = -2
Query:  242 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 442
            V KLDT F+C FCNH  SV C +D KN IG   C IC +SF T I +L++P+D+YS+W D  E VN+
Sbjct:   16 VQKLDTKFNCLFCNHEKSVSCTLDKKNSIGTLSCKICGQSFQTRINSLSQPVDVYSDWFDAVEEVNS 82          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_CAEEL (Transcription elongation factor 1 homolog OS=Caenorhabditis elegans GN=Y54G11A.11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.853e-15
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  242 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVNN 433
            LDT F+CPFCNH    E ++D +  +G   C +C E F T I  L+EPID+YS+W+D CE+ NN
Sbjct:   20 LDTQFNCPFCNHERVCEVKMDREKNVGYISCRVCSEDFQTNINYLSEPIDVYSDWVDACEQANN 83          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_SCHPO (Transcription elongation factor 1 homolog OS=Schizosaccharomyces pombe GN=SPAC1B3.02c PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.201e-14
Identity = 36/78 (46.15%), Postives = 48/78 (61.54%), Query Frame = -2
Query:  221 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECE-------RVNNLEDDGAY 433
            LDT F+C FCNH  SV C +D ++ +G   C IC +S    ITAL+ PID+YS+WID C+        V+N+ D  AY
Sbjct:   19 LDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPIDVYSDWIDACDAVANQAKEVDNINDQEAY 96          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_MOUSE (Transcription elongation factor 1 homolog OS=Mus musculus GN=Elof1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  245 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 433
            L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_HUMAN (Transcription elongation factor 1 homolog OS=Homo sapiens GN=ELOF1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  245 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 433
            L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_BOVIN (Transcription elongation factor 1 homolog OS=Bos taurus GN=ELOF1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.961e-14
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = -2
Query:  245 LDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 433
            L+T F+CPFCNH  S + ++D     G   C +C E F T IT L+EP+D+YS+WID CE  N
Sbjct:   20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDVYSDWIDACEAAN 82          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_DROME (Transcription elongation factor 1 homolog OS=Drosophila melanogaster GN=CG40228 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.265e-13
Identity = 29/66 (43.94%), Postives = 41/66 (62.12%), Query Frame = -2
Query:  245 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 442
            ++ LD  F+CPFCNH  S E ++D      +  C +C E F T I  L+EPID+Y++W+D CE  N
Sbjct:   17 IEPLDQQFNCPFCNHEKSCEVKMDKSRNTAKITCRVCLEDFQTGINFLSEPIDVYNDWVDACETAN 82          
BLAST of CV886648 vs. ExPASy Swiss-Prot
Match: ELOF1_MANSE (Transcription elongation factor 1 homolog OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.046e-13
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = -2
Query:  245 VDKLDTVFSCPFCNHGTSVECRIDMKNLIGEAICNICQESFSTTITALTEPIDIYSEWIDECERVN 442
            ++ LD  F+CPFCNH  S E ++D         C +C E F TT   L+EPID+Y++W+D CE  N
Sbjct:   17 IEPLDQQFNCPFCNHEKSCEVKMDRAKNTAMIQCTVCLEDFHTTTNVLSEPIDVYNDWVDACESAN 82          
The following BLAST results are available for this feature:
BLAST of CV886648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ELOF1_ORYSJ1.509e-3388.73Transcription elongation factor 1 homolog OS=Oryza... [more]
ELOF1_ARATH1.196e-3078.95Transcription elongation factor 1 homolog OS=Arabi... [more]
ELF1_YEAST1.676e-1653.73Transcription elongation factor 1 OS=Saccharomyces... [more]
ELOF1_CAEEL1.853e-1550.00Transcription elongation factor 1 homolog OS=Caeno... [more]
ELOF1_SCHPO1.201e-1446.15Transcription elongation factor 1 homolog OS=Schiz... [more]
ELOF1_MOUSE5.961e-1449.21Transcription elongation factor 1 homolog OS=Mus m... [more]
ELOF1_HUMAN5.961e-1449.21Transcription elongation factor 1 homolog OS=Homo ... [more]
ELOF1_BOVIN5.961e-1449.21Transcription elongation factor 1 homolog OS=Bos t... [more]
ELOF1_DROME2.265e-1343.94Transcription elongation factor 1 homolog OS=Droso... [more]
ELOF1_MANSE5.046e-1343.94Transcription elongation factor 1 homolog OS=Mandu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_024D04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_024_T3_D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886648 ID=CV886648; Name=CV886648; organism=Citrus sinensis; type=EST; length=527bp
CCCATGATTATTACAACTGCATTAATAGCATCCAATTACACAACATCAGT
TAGCAACATAACCTGAGATAGTCTACAGATGTAAATGAGCACTACTCTGT
GAACAGATATAATTACATCCACTAGAGATTCAAACACCGATGTTGGTACA
GGAGACATCAAGCTTTCTCATAACAGAGATTCAAACACCGACGTTAGTAC
AGGAGACATCAAGCTTTCTCATAAGCACCGTCATCTTCAAGGTTGTTAAC
CCGTTCACATTCATCAATCCATTCACTATATATGTCTATTGGTTCAGTTA
AAGCTGTGATAGTAGTGCTGAAGCTCTCTTGGCATATATTGCATATAGCT
TCGCCAATCAAGTTCTTCATATCAATGCGGCACTCAACACTGGTGCCATG
GTTACAGAAGGGACAACTGAAGACAGTGTCAAGCTTGTCCACTCGCTTCT
TGGGTGGCGGCTTTGCCCTTGACTTCCTCTTTCCCATAGCTCAAGTCCTG
CAATTGATAACTGCTTGATCGCGAGGC
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