EL492435

Overview
NameEL492435
Unique NameEL492435
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length194
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.594e-27
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPMMVRDFHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFV
Sbjct:  268 SVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFV 323          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.425e-27
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPMMVRDFHAVIGKETR+QA+EKWGGKPDVL+ACVGGGSNAMGLFHEFV
Sbjct:  273 SVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFV 328          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.547e-27
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPMMVR+FHAVIGKETR+QALEKWGGKPDVL+ACVGGGSNAMGLFHEFV
Sbjct:  264 SVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFV 319          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.892e-26
Identity = 51/56 (91.07%), Postives = 55/56 (98.21%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPMMVR+FH VIGKETRRQA++KWGGKPDVL+ACVGGGSNAMGLFHEFV
Sbjct:  241 SVAGPHPYPMMVREFHKVIGKETRRQAMDKWGGKPDVLVACVGGGSNAMGLFHEFV 296          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.344e-26
Identity = 51/56 (91.07%), Postives = 54/56 (96.43%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFV 181
            SVAGPHPYPMMVR+FH VIGKETRRQA+ KWGGKPDVL+ACVGGGSNAMGLFHEFV
Sbjct:  187 SVAGPHPYPMMVREFHKVIGKETRRQAMHKWGGKPDVLVACVGGGSNAMGLFHEFV 242          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.859e-25
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFV + S
Sbjct:  210 SVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESS 269          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.859e-25
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPMMVRDFHAVIG+ETR QALEKWGG PD+L+ACVGGGSNAMGLF+EFV + S
Sbjct:  210 SVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESS 269          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.684e-24
Identity = 48/58 (82.76%), Postives = 54/58 (93.10%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQ 187
            SVAGPHPYPM+VR+FHAVIG ETR+Q LEKWGG PD+L+ACVGGGSNAMGLFHEFV +
Sbjct:  207 SVAGPHPYPMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEE 264          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.579e-24
Identity = 49/60 (81.67%), Postives = 52/60 (86.67%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPMMVRDFHAVIG ETR Q LEKW G PD+L+ACVGGGSNAMGLFHEF+   S
Sbjct:  207 SVAGPHPYPMMVRDFHAVIGVETRAQCLEKWNGLPDILMACVGGGSNAMGLFHEFINDPS 266          
BLAST of EL492435 vs. ExPASy Swiss-Prot
Match: TRPB1_ANASP (Tryptophan synthase beta chain 1 OS=Anabaena sp. (strain PCC 7120) GN=trpB1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.810e-24
Identity = 47/60 (78.33%), Postives = 54/60 (90.00%), Query Frame = 2
Query:   14 SVAGPHPYPMMVRDFHAVIGKETRRQALEKWGGKPDVLIACVGGGSNAMGLFHEFVTQDS 193
            SVAGPHPYPM+VRDFHA+IGKETR Q  EKWGG PD+L+ACVGGGSNA+GLFHEF+ + S
Sbjct:  207 SVAGPHPYPMIVRDFHAIIGKETRVQCQEKWGGLPDILLACVGGGSNAIGLFHEFIDEPS 266          
The following BLAST results are available for this feature:
BLAST of EL492435 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TRPB1_ARATH2.594e-2796.43Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH4.425e-2794.64Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_CAMAC7.547e-2794.64Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE4.892e-2691.07Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB1_MAIZE8.344e-2691.07Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB_ANAVT1.859e-2585.00Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB2_ANASP1.859e-2585.00Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_THEEB2.684e-2482.76Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_TRIEI4.579e-2481.67Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB1_ANASP7.810e-2478.33Tryptophan synthase beta chain 1 OS=Anabaena sp. (... [more]

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Properties
Property NameValue
Genbank descriptionC0321 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0321, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492435 ID=EL492435; Name=EL492435; organism=Citrus sinensis; type=EST; length=194bp
GACTGCGTAGTGATCTGTTGCCGGGCCTCATCCGTACCCCATGATGGTCA
GAGATTTCCATGCTGTGATTGGAAAAGAAACAAGAAGACAAGCATTGGAG
AAATGGGGTGGGAAACCGGATGTGCTGATTGCATGCGTTGGTGGTGGTTC
AAATGCCATGGGTCTCTTCCACGAATTTGTTACTCAGGACTCAT
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