EL492431

Overview
NameEL492431
Unique NameEL492431
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length157
Libraries
Library NameType
Citrus sinensis flesh cDNA-AFLP Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9531 contig Csv1_Contig9531:319..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1B_ARATH (SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.868e-18
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF
Sbjct:  103 KVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 148          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1A_ARATH (SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.227e-17
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            ++DQATLF+LILAANYLNIK LLDLTCQTVADMIKGKTPEEIR TF
Sbjct:   92 KIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTF 137          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
BLAST of EL492431 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.812e-16
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:   13 QVDQATLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTF 150
            +VDQ TLF+LILAANYL+IKGLLD+TC+TVA+MIKGKTPEEIRKTF
Sbjct:   94 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTF 139          
The following BLAST results are available for this feature:
BLAST of EL492431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SKP1B_ARATH2.868e-1895.65SKP1-like protein 1B OS=Arabidopsis thaliana GN=SK... [more]
SKP1A_ARATH9.227e-1789.13SKP1-like protein 1A OS=Arabidopsis thaliana GN=SK... [more]
SKP1_XENLA7.812e-1684.78S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT7.812e-1684.78S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB7.812e-1684.78S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE7.812e-1684.78S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA7.812e-1684.78S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN7.812e-1684.78S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK7.812e-1684.78S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO7.812e-1684.78S-phase kinase-associated protein 1 OS=Cavia porce... [more]

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Properties
Property NameValue
Genbank descriptionC0270 Citrus sinensis flesh cDNA-AFLP Library Citrus sinensis cDNA clone ClC0270, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EL492431 ID=EL492431; Name=EL492431; organism=Citrus sinensis; type=EST; length=157bp
CACTGACTTCGTCAAGTTGACCAGGCCACTCTCTTCGATCTCATCCTGGC
TGCAAACTACCTGAACATCAAGGGGCTGCTGGACCTTACCTGCCAGACTG
TTGCTGACATGATCAAGGGAAAGACTCCGGAGGAGATTCGAAAGACCTTC
TGGGACC
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