CX043282

Overview
NameCX043282
Unique NameCX043282
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:81..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 406.757 bits (1044), Expect = 8.119e-113
Identity = 195/207 (94.20%), Postives = 202/207 (97.58%), Query Frame = -2
Query:  233 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 853
            QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDM AYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct:  204 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMAAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 404.831 bits (1039), Expect = 3.085e-112
Identity = 197/208 (94.71%), Postives = 203/208 (97.60%), Query Frame = -2
Query:  233 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVADDLRARL 853
            QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSK+E AGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVAD+L+ARL
Sbjct:  204 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKYEEAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 404.445 bits (1038), Expect = 4.030e-112
Identity = 194/208 (93.27%), Postives = 205/208 (98.56%), Query Frame = -2
Query:  230 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 853
            +KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA+WKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAACIG VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  205 EKKWPLYLSTKNTILKKYDGRFKDIFQEVYEASWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 400.593 bits (1028), Expect = 5.819e-111
Identity = 191/208 (91.83%), Postives = 203/208 (97.60%), Query Frame = -2
Query:  230 QKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 853
            +KKWPLYLSTKNTILKKYDGRFKDIFQEVYEA WKSK+EAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRH+RVHQKGGETSTNSIASIFAW+RGLAHRAKLD+NA LLDFTEKLEAACIG VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  225 EKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHFRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.705e-86
Identity = 153/208 (73.56%), Postives = 176/208 (84.62%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KSKFEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F   LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  203 KGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSKFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.705e-86
Identity = 152/208 (73.08%), Postives = 177/208 (85.10%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  203 KGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.705e-86
Identity = 152/208 (73.08%), Postives = 177/208 (85.10%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR+HQKG ETSTN IASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  203 KGWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQKIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_SHEEP (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.443e-85
Identity = 151/208 (72.60%), Postives = 176/208 (84.62%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAW+RGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  203 KNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSQFEAQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_BOVIN (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.163e-85
Identity = 150/208 (72.12%), Postives = 175/208 (84.13%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  IWYEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVLVCPDGKT+EAEAAHGTVTRHYR++QKG ET TN IASIFAW+RGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+ +L+
Sbjct:  203 KNWPLYLSTKNTILKKYDGRFKDIFQEIYDKQYKSEFEAQNIWYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLVCPDGKTVEAEAAHGTVTRHYRMYQKGQETLTNPIASIFAWTRGLAHRAKLDNNKELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLQLKLA 410          
BLAST of CX043282 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 9.355e-85
Identity = 151/208 (72.60%), Postives = 176/208 (84.62%), Query Frame = -2
Query:  230 KKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKSKFEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQSDFLAQGFGSLGLMTSVLVCPDGKTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 850
            K WPLYLSTKNTILKKYDGRFKDIFQE+Y+  +KS+FEA  I YEHRLIDDMVA A+KSEGG++WACKNYDGDVQSD +AQG+GSLG+MTSVL+CPDGKT+EAEAAHGTVTRHYR++QKG ETSTN IASIFAWSRGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  203 KGWPLYLSTKNTILKKYDGRFKDIFQEIYDKKYKSQFEAQNICYEHRLIDDMVAQAMKSEGGFIWACKNYDGDVQSDSVAQGYGSLGMMTSVLICPDGKTVEAEAAHGTVTRHYRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
The following BLAST results are available for this feature:
BLAST of CX043282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDHC_TOBAC8.119e-11394.20Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOLTU3.085e-11294.71Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHC_SOYBN4.030e-11293.27Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHP_MEDSA5.819e-11191.83Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_RAT1.705e-8673.56Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MICOH1.705e-8673.08Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME1.705e-8673.08Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_SHEEP1.443e-8572.60Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovi... [more]
IDHC_BOVIN7.163e-8572.12Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos... [more]
IDHC_MOUSE9.355e-8572.60Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10A10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A10-B20-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043282 ID=CX043282; Name=CX043282; organism=Citrus sinensis; type=EST; length=854bp
TATAACAAGCCATGTTCAAGACATTTGCTTGCATGAAAATGAGAGTTTGT
CGATCAACAGGAAAGCAGTCTATTGTAGCAATTAGAAGAGAACCAAATCC
CAATCCCCAATTTTCCCCTCTTCAATTATTTCTTCTCAGCATAATATGAA
AAAGATAACCAAAGGAAGCTTCCCCAAGTCTTTACCTTTGAATGTGTAGC
ATCTGCAACAAAAAAAATCATGCTTTGCCAGAGAGTCTTGCTCTTAGATC
GTCGGCCACAGCATCAATGAACTCTTCAGTATTCAGATAGTGTTCCCTAG
TCATCTTAGATCCATGGATAATAAGTGCAAGATCCTTGGTCATCTTCCCA
GATTCAACAGTGCCAATACATGCAGCTTCTAGTTTCTCAGTAAAATCCAA
TAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCCTCGTGACC
AAGCAAAGATGGAGGCTATGCTGTTTGTGCTAGTTTCACCACCTTTCTGA
TGAACTCTGTAGTGTCGGGTAACTGTTCCATGGGCTGCTTCGGCTTCAAT
TGTCTTCCCATCAGGGCATACCAGTACAGATGTCATCAATCCAAGAGATC
CAAACCCTTGAGCTAGGAAATCACTCTGGACATCTCCATCATAATTTTTG
CAAGCCCACACATAACCTCCTTCACTTTTGAGAGCATAAGCTACCATATC
ATCAATGAGACGATGTTCATACCATATGCCAGCAGCTTCAAACTTTGACT
TCCAGTTTGCCTCATAAACCTCTTGAAATATGTCTTTGAATCTTCCATCA
TACTTCTTAAGGATAGTGTTTTTTGTACTAAGATAGAGTGGCCACTTCTT
CTGA
back to top