CV886304

Overview
NameCV886304
Unique NameCV886304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7030 contig Csv1_Contig7030:46..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CV886304 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 3.788e-71
Identity = 129/168 (76.79%), Postives = 147/168 (87.50%), Query Frame = -1 
Query:  203 MSGAGKKIADVAFKAGRTIDWEGMAKMLVSDEARKEFATLRRAFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKEAXXXXXXXXXXXXXEIAEVRELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYWGY 706
            MSGAGKKIADVAFKA RTIDW+GMAK+LV+DEAR+EF+ LRRAFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELKEA             EIA+V+E+ +K+STMTA+EYFEKHPELKKKFDDEIRND WGY
Sbjct:    1 MSGAGKKIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168
The following BLAST results are available for this feature:
BLAST of CV886304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH3.788e-7176.79ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_022C09_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_022_T7_C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886304 ID=CV886304; Name=CV886304; organism=Citrus sinensis; type=EST; length=763bp
TTTTTTTTTTTTTTTTTCACGAAAACTGAATGTTTAGCATAGATGTGATC
AAAGCTCAAATTTTGAAACCATGAGCAACAGGTTTATGCAAAAACAATTC
GAATGATCATTATTATTTAACAAGCTGGGAAAACAGGGCAACTTCAGAAA
ATCTTGGCCGAGCTAGGAAATGCAGCTGCTAAATTGAGCAAATGTGTGAT
CAATAGCCCCAGTAGTCATTCCTGATTTCATCATCGAACTTCTTTTTGAG
TTCCGGATGCTTTTCAAAGTATTCCTCAGCGGTCATGGTGCTGATCTTTT
CCTTCAGTTCTCGAACCTCAGCTATTTCTTTCTCCAAACGCTCGGACTCC
TTAAGAGATTTCCCTTCTGCTTCTTTCAATTCCACCAGCAAAGCATCAAA
CTTAGATTTGTATTCAGGGGTGACTTTGTCTACATACTTTGGGACCTCTA
TGCTTTCATAAGCCTGTTTGTACATGTCCACCAAGCGAGAGCCAATTCCT
TTTCTGTAATACTCCCAGTCAATAGGTTCAGGTTCCTGGCTGAACTTGGT
CTGAAGAGTGGAGTTGACTTCGTCGAAAGCGCGACGGAGAGTGGCGAACT
CCTTGCGCGCCTCATCGGAGACCAGCATCTTCGCCATCCCTTCCCAATCT
ATGGTCCTTCCGGCCTTGAATGCGACGTCAGCTATTTTCTTGCCAGCTCC
GCTCATTTTCTCTCTCGACTGATTTTCCCTTTTTCTTTTCTCTTAATTTT
TTGATTTTCTCCT
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