EY665536

Overview
NameEY665536
Unique NameEY665536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length977
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 1.161e-60
Identity = 121/186 (65.05%), Postives = 142/186 (76.34%), Query Frame = 1
Query:  106 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT+ DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN MDG YIAPAFMDKLVVHITKNFM+LPN+KVP  LG  G  KG+ K       FAKM   P   M+ +G++E G
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWG-GKGQGKSFQCELVFAKMRISPI--MMSAGELESG 197          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.413e-60
Identity = 125/188 (66.49%), Postives = 146/188 (77.66%), Query Frame = 1
Query:  106 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT+ D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+P  LG  G  KG+ K       FAKMG  P   M+ +G++E G
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPI--MMSAGELESG 197          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.413e-60
Identity = 125/188 (66.49%), Postives = 146/188 (77.66%), Query Frame = 1
Query:  106 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT+ D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN MDG YIAPAFMDKLVVHITKNF+SLPNIK+P  LG  G  KG+ K       FAKMG  P   M+ +G++E G
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWG-GKGQGKSFQCELVFAKMGINPI--MMSAGELESG 197          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 226.098 bits (575), Expect = 2.422e-58
Identity = 124/189 (65.61%), Postives = 143/189 (75.66%), Query Frame = 1
Query:  109 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QTN DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVP  LG  G  KG+ K       FAKMG  P   M+ +G++E G
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWG-GKGQGKSFQCELVFAKMGINPI--MMSAGELESG 199          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 3.163e-58
Identity = 122/189 (64.55%), Postives = 140/189 (74.07%), Query Frame = 1
Query:  109 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT  DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVP  LG  G  KG+ K       FAKMG  P   M+ +G++E G
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPI--MMSAGELESG 201          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 6.594e-56
Identity = 122/201 (60.70%), Postives = 144/201 (71.64%), Query Frame = 1
Query:   91 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT+ DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN MDG YIAPAFMDKLVVHITKNF++LPNIKVP  LG  G  KG+ K        AKMG  P   M+ +G++E G
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWG-GKGQGKSFQCELVMAKMGINPI--MMSAGELESG 197          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.125e-55
Identity = 118/190 (62.11%), Postives = 138/190 (72.63%), Query Frame = 1
Query:  106 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT++DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVP  LG  G  KG+ K       F KMG  P   M+ +G++E G
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWG-GKGQGKSFQCELVFRKMGINPI--MMSAGELESG 201          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.624e-54
Identity = 116/194 (59.79%), Postives = 137/194 (70.62%), Query Frame = 1
Query:   94 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT +DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVP  LG  G  KG+ K       F KMG  P   M+ +G++E G
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPI--MMSAGELESG 201          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.164e-52
Identity = 112/193 (58.03%), Postives = 134/193 (69.43%), Query Frame = 1
Query:   85 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT  D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVP  LG  G  KG+ K       FAKMG  P   M+ +G++E G
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWG-GKGQGKSFQCELVFAKMGINPI--MMSAGELESG 194          
BLAST of EY665536 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.593e-52
Identity = 113/192 (58.85%), Postives = 139/192 (72.40%), Query Frame = 1
Query:   94 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTNNDRWKGLAYDQSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTMDGLYIAPAFMDKLVVHITKNFMSLPNIKVPSPLGYMGDAKGKEKYSHVSFGFAKMGNPPHL*MIWSGKVEKG 663
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE K+   DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVP  LG  G  KG+ K       F KMG  P   M+ +G++E G
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDETKE---DRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWG-GKGQGKSFQCELVFRKMGINPI--MMSAGELESG 196          
The following BLAST results are available for this feature:
BLAST of EY665536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO1.161e-6065.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR4.413e-6066.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR4.413e-6066.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.422e-5865.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.163e-5864.55Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH6.594e-5660.70Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.125e-5562.11Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.624e-5459.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.164e-5258.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.593e-5258.85Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-D12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665536 ID=EY665536; Name=EY665536; organism=Citrus sinensis; type=EST; length=977bp
TTCCCGACCCACGCGTCCGCCCACACGTCCTGCATTGCAGCGTGACCCTT
TAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTG
CTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGC
TCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCC
ATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGA
ACAAGCAGACCAACAACGACAGATGGAAGGGCCTTGCCTACGACCAATCT
GATGACCAGCAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTT
CCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATG
ACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATGGAC
GGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCAC
CAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCCTCTCCTCTTGGGT
ATATGGGGGACGCAAAGGGCAAGGAAAAATATTCCCATGTGAGCTTTGGT
TTCGCCAAAATGGGGAATCCACCCCACTTATGAATGATATGGTCGGGAAA
AGTGGAAAAGGGGGCACATGCCTGGAGAACCCCGCCTAAGTTCGAATCTG
GCCAGGAAGCTACCCGTGCAGGGCAACCTGACCTTTATCCAATAACCGGC
AACAAAACGCGCCTGCCCTCACCGAACCATCCGATCGTTGTATGCCGGCG
AGCCTGGGTCGTCAAGGGGTGGGGCACCCACCCCAAAAACAGCGGAGAAA
CAAACTCAAATGCGCTTAACGCCCAACCACATCCATCAAATCCCTGGCCT
ATAATACTCCCAACTTTTGGGGGCCCACACTACCTCTGGGAAATGTTCTC
AACAACGGGAAGGGAAAATACGCCCCC
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