EY665535

Overview
NameEY665535
Unique NameEY665535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12466 contig Csv1_Contig12466:1275..1742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.363e-26
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYG
Sbjct:  395 EYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 67.3958 bits (163), Expect = 5.363e-26
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 3
Query:  168 GKAAQQMNVPVPEGFTDPTAENFDPTARSDDGSCQY 275
            GK AQQ+N+PVPEG TDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.415e-25
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2
Query:    5 YGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  396 YGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          

HSP 2 Score: 63.5438 bits (153), Expect = 4.415e-25
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 3
Query:  165 GGKAAQQM-NVPVPEGFTDPTAENFDPTARSDDGSCQY 275
            GG+AAQQ+ NVPVPEG TDP A N+DPTARSDDGSC Y
Sbjct:  437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.267e-24
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+G
Sbjct:  393 EYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 62.7734 bits (151), Expect = 1.267e-24
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 3
Query:  168 GKAAQQMNVPVPEGFTDPTAENFDPTARSDDGSCQYTL 281
            GKAAQQ+++PV +G TDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.634e-24
Identity = 32/43 (74.42%), Postives = 42/43 (97.67%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG
Sbjct:  386 EYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          

HSP 2 Score: 62.003 bits (149), Expect = 3.634e-24
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  168 GKAAQQM-NVPVPEGFTDPTAENFDPTARSDDGSCQYT 278
            G+ AQQ  N+PVPEG TDP A+NFDPTARSDDGSC YT
Sbjct:  428 GQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.042e-23
Identity = 31/43 (72.09%), Postives = 41/43 (95.35%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            EYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYG
Sbjct:  385 EYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          

HSP 2 Score: 60.8474 bits (146), Expect = 1.042e-23
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 3
Query:  168 GKAAQQMNVPVPEGFTDPTAENFDPTARSDDGSCQYT 278
            GK AQQ  +PVPEG TD  A+N+DPTARSDDGSC YT
Sbjct:  427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.962e-14
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            EYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  395 EYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.272e-13
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 127
            EYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  399 EYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.169e-13
Identity = 35/43 (81.40%), Postives = 41/43 (95.35%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 130
            EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYG
Sbjct:  382 EYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.833e-13
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 127
            +YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  397 QYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of EY665535 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.077e-12
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2
Query:    2 EYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 124
            EYGNM+VQEQENVKRVQLA+ YL EAALG+ANADAI +GNF
Sbjct:  399 EYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
The following BLAST results are available for this feature:
BLAST of EY665535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RCA_ARATH5.363e-2679.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR4.415e-2580.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.267e-2476.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ3.634e-2474.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.042e-2372.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.962e-1483.72Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.272e-1383.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU2.169e-1381.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.833e-1380.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC1.077e-1282.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-D11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665535 ID=EY665535; Name=EY665535; organism=Citrus sinensis; type=EST; length=468bp
CGAGTACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTC
AGTTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGCA
GATGCTATTCAGAGTGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCT
AAGAGGCCTTGATGGGAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTT
CCTGAAGGATTTACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAG
AAGTGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGG
TTGAGAAGTGTCGCACTTTGCTTAGGATGTGAGATATTCAAATAATATTG
TTGCATTTTCATTTCTTTGTTAATTAGAAAGAATCCTCTAATTTTGTGTT
ATATCACAACTCTTTATTCGATCTTTAAAAGGTGCTCCTTCTTACCATTA
TTTAAAAAAAAAAAAAAA
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