EY665529

Overview
NameEY665529
Unique NameEY665529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length877
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY665529 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 65/208 (31.25%), Postives = 91/208 (43.75%), Query Frame = 3 
Query:  159 LQSSVSCRAVSQERSLFKFKPSTGSSAFVKTT---QFITWHNGYSTRGFSHRIYAASDFSRRRQRGVSTPRTKDTGSKGFTPKTPVGTGIQKRDQKKNGDKEGSGTPVSGEYGGPTKKT--------PAPTNGVEKKPAVELSRDNQIGETN------VDITEQ--ESENIPRPNKDLISAKSSQVVGNGSGGKIDEGVQEKENTPNQ 725
            L  S+SC +VS   +  K KP  G  +   T+   Q  +W       G S  I A  +FS RR+R VSTPR++ +  KGF P+ P G   Q++ QK NGDKE   T  S E     +KT           T GV +        D   G T       V ++ Q  ESE     +KD +    S+     SG  ID  ++E+  +  +
Sbjct:    7 LHRSLSCTSVSNAITHLKIKPILGFVSHGTTSLSVQSSSWRKDGMVTGVSFSICA--NFSGRRRRKVSTPRSQGSSPKGFVPRKPSGMSTQRKVQKSNGDKESKSTSTSKESEISNQKTVEARVETSDDDTKGVVRDHKFLEDEDEINGSTKSISMSPVRVSSQFVESEETGGDDKDAVKLNKSK-RSEESGFIIDSVIREQSGSQGE 211
The following BLAST results are available for this feature:
BLAST of EY665529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SSY3_SOLTU1.697e-1231.25Soluble starch synthase 3, chloroplastic/amyloplas... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-D03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665529 ID=EY665529; Name=EY665529; organism=Citrus sinensis; type=EST; length=877bp
CCACGCGTCCGAGATGGGTTTTATGTTTGTGAATTGATCAGTGATTATTT
GACTGCTGTGGTGAAAGAGTCCAAAGAACTCAAGCTTCAGTTCAACAAGC
AAACATTCTTCTCTTTACTCTTTAATTAAAGCCAACCATGGCAGCTGCTG
GCTTACAGTTGCAAAGTTCAGTGAGTTGCAGAGCTGTGTCTCAGGAGAGA
AGTCTATTCAAGTTCAAACCTTCAACGGGTTCCTCTGCTTTTGTCAAAAC
AACACAATTTATTACATGGCACAATGGATACTCCACGAGAGGATTTTCTC
ATAGGATCTATGCTGCTTCAGATTTTTCAAGGAGGAGACAGAGAGGAGTC
TCAACACCAAGGACTAAAGATACTGGTTCTAAGGGATTTACACCGAAAAC
ACCTGTGGGAACAGGCATCCAGAAGAGGGATCAGAAGAAAAATGGTGACA
AAGAGGGTTCAGGCACACCAGTATCGGGTGAGTATGGAGGGCCCACCAAG
AAGACGCCTGCACCTACAAATGGTGTGGAGAAAAAACCTGCGGTTGAACT
TTCTAGGGATAATCAAATTGGGGAAACAAATGTCGATATAACAGAACAGG
AAAGTGAGAACATACCACGACCCAATAAAGATTTGATAAGTGCTAAAAGC
AGTCAAGTGGTGGGAAATGGAAGTGGGGGTAAAATTGATGAAGGGGTTCA
GGAGAAAGAAAACACTCCCAATCAAATATTAAGAATGGGACAGAAAAGGC
AATTTCAAAAAAAAAGCAATTGAATCCTAATAAAAGCAATGAACAGGGGA
AGGGATGAAAAGAATAAGGGTTGAAATAAAACCACTTGAAAAAGGTCCCT
CAAATTAAAAAAAGAAGAGGAAAAAAA
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