EY665522

Overview
NameEY665522
Unique NameEY665522
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length984
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665522_ssr389 microsatellite EY665522_ssr389:389..398. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665522_ssr500 microsatellite EY665522_ssr500:500..509. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665522_ssr229 microsatellite EY665522_ssr229:229..240. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665522_ssr241 microsatellite EY665522_ssr241:241..260. BLAST: Citrus ESTs to Prunus persica proteins V1
EY665522_ssr396 microsatellite EY665522_ssr396:396..407. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY665522 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.843e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:   91 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 210
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99
The following BLAST results are available for this feature:
BLAST of EY665522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.843e-1175.00Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-001-C06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665522 ID=EY665522; Name=EY665522; organism=Citrus sinensis; type=EST; length=984bp
CCACGCGTCCGGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGC
ACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACA
ACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGT
ATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGT
TTATGACTGGTAAGTACGTGCGTGTGTCCTCACTCACTCACTCGCTCGCT
CGCTCGCTCGCTCTTCACTTGCATAGATGCTGCATGCTTGTTCTAACTTA
TTATTCTTTCTTTAGACCCTTATCAGTTGAACGCAAAGGCAACTTGTACT
CTATCTATATATGTTTAATCATGTTCGGTTGCTGATAAATATATATATTT
ATTTATTAATTTGTTCTCTTTTTCTCCCCCCCTTTTTTTAAAACTGAATT
AATTCCCCGATCAGAAAAAAAAACGCCAGCTTATTATATTCATGTGTGCG
TGTGTGTGTTTTTTAAAAAGAAAAATGATGGAAACCAAATCCGATGGAGC
ATCGAACTCAAACATCTCCTGTTTTTGGTTTGGTTTTTTTTGGCAGTTCT
TACTGGACTTCTCCTCAACAACCCAAATAAATAGGCTAAATAGGGATGGG
AGGAAAATCGTGGGCATCTCTGATCCCAATGGGACGCCGTTTGAAAAAAA
AACCTTTTGCACTTATTCCAGCAGATGGTCAACTCACATTCCACCCTTCT
TTTATTGAAGATCCCCTGCTCACTCTCTCCCGTTACGTCCACGCCCACGC
GGAGGCACTAAGATAATTACTATCTTTCGGGCCCGGGAATCGTCTGGAAA
CACATTCGATGGTCCCCTTGATCCTGGGGGCGTCCTGGAGCAGATGTTTC
TCTTAGCATGCGAACGACGAACCAACTGACCCTCATCCCCTCGTTATCCA
CCTCACGGCACGTATACAAGCGCTCCTACTTCCA
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