EH668992

Overview
NameEH668992
Unique NameEH668992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length139
Libraries
Library NameType
Citrus apomitic embryos (subtractive cDNA library)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3020 contig Csv1_Contig3020:218..356. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_WHEAT (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Triticum aestivum GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_VITVI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Vitis vinifera GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_TRACE (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Trachelium caeruleum GN=ndhK PE=5 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_TOBAC (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Nicotiana tabacum GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SOYBN (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Glycine max GN=ndhK PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SORBI (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Sorghum bicolor GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SACOF (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Saccharum officinarum GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_SACHY (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Saccharum hybrid GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_RANMC (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Ranunculus macranthus GN=ndhK PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
BLAST of EH668992 vs. ExPASy Swiss-Prot
Match: NDHK_POPTR (NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Populus trichocarpa GN=ndhK PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.539e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 120
            TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT
Sbjct:   41 TSCCFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGT 80          
The following BLAST results are available for this feature:
BLAST of EH668992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
NDHK_WHEAT1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_VITVI1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_TRACE1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_TOBAC1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SOYBN1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SORBI1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SACOF1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_SACHY1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_RANMC1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]
NDHK_POPTR1.539e-16100.00NAD(P)H-quinone oxidoreductase subunit K, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionapomitic19 Citrus apomitic embryos (subtractive cDNA library) Citrus sinensis cDNA clone apomitic19 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH668992 ID=EH668992; Name=EH668992; organism=Citrus sinensis; type=EST; length=139bp
ACCAGTTGTTGTTTCATTGAATTTGCTTCATTAATCGGCTCGCGGTTCGA
TTTTGACCGTTATGGGCTGGTACCAAGATCGAGCCCTAGACAGGCGGACC
TAATTTTAACAGCTGGTACCTGCCCGGGCGGCCGCTCGA
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