EY665520 | Citrus Genome Database

Overview


Name	EY665520
Unique Name	EY665520
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	885

Libraries


Library Name	Type
Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSJ (Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CAM2 PE=2 SV=3)

HSP 1 Score: 50.447 bits (119), Expect = 2.777e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 2.777e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 2.777e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM2_ORYSI (Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2 PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 2.777e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 2.777e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 2.777e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM1_ARATH (Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=1 SV=3)

HSP 1 Score: 50.447 bits (119), Expect = 2.777e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMAKKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 2.777e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 2.777e-12
Identity = 15/52 (28.85%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   +++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVEEMIREADVDGDGQINYEEFVKIMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM6_ARATH (Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 2.777e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 2.777e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.4166 bits (67), Expect = 2.777e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLSDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM3_PETHY (Calmodulin-related protein OS=Petunia hybrida GN=CAM53 PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 3.491e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 3.491e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 3.491e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_SPIOL (Calmodulin OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 3.591e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 3.591e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 3.591e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_MEDSA (Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 3.591e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 3.591e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 3.591e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_LILLO (Calmodulin OS=Lilium longiflorum PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 3.591e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 3.591e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 3.591e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_HORVU (Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2)

HSP 1 Score: 50.0618 bits (118), Expect = 3.591e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 3.591e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 3.591e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

[Close]

BLAST of EY665520 vs. ExPASy Swiss-Prot
Match: CALM_HELAN (Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3)

HSP 1 Score: 50.0618 bits (118), Expect = 3.591e-12
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1

Query:   76 MTPLGLTPTEGDLHNMINELYADDHGTLHVPEYLILLDPNMLDCHSWDELTYAF 237
            M  LG  PTE +L +MINE+ AD +GT+  PE+L L+   M D  S +EL  AF
Sbjct:   37 MRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLNLMARKMKDTDSEEELKEAF 90

HSP 2 Score: 31.9574 bits (71), Expect = 3.591e-12
Identity = 15/23 (65.22%), Postives = 17/23 (73.91%), Query Frame = 3

Query:    6 RPAFSLFDCDVDRCLTTKELVAV 74
            + AFSLFD D D C+TTKEL  V
Sbjct:   14 KEAFSLFDKDGDGCITTKELGTV 36

HSP 3 Score: 30.0314 bits (66), Expect = 3.591e-12
Identity = 16/52 (30.77%), Postives = 23/52 (44.23%), Query Frame = 2

Query:  254 DLRGLFSSTEMLQDITILSEKLHRSSTYETLFAPDAYADAHITYQELAHVLL 409
            D  G  S+ E+   +T L EKL      E +   D   D  I Y+E   V++
Sbjct:   96 DQNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKVMM 147

The following BLAST results are available for this feature:

BLAST of EY665520 vs. ExPASy Swiss-Prot

BLAST of EY665520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35


Match Name	E-value	Identity	Description
CALM2_ORYSJ	2.777e-12	48.15	Calmodulin-2 OS=Oryza sativa subsp. japonica GN=CA...	[more]
CALM2_ORYSI	2.777e-12	48.15	Calmodulin-2 OS=Oryza sativa subsp. indica GN=CAM2...	[more]
CALM1_ARATH	2.777e-12	48.15	Calmodulin-1/4 OS=Arabidopsis thaliana GN=CAM1 PE=...	[more]
CALM6_ARATH	2.777e-12	48.15	Calmodulin-6 OS=Arabidopsis thaliana GN=CAM6 PE=1 ...	[more]
CALM3_PETHY	3.491e-12	48.15	Calmodulin-related protein OS=Petunia hybrida GN=C...	[more]
CALM_SPIOL	3.591e-12	48.15	Calmodulin OS=Spinacia oleracea PE=1 SV=2	[more]
CALM_MEDSA	3.591e-12	48.15	Calmodulin OS=Medicago sativa GN=CAL1 PE=2 SV=2	[more]
CALM_LILLO	3.591e-12	48.15	Calmodulin OS=Lilium longiflorum PE=2 SV=2	[more]
CALM_HORVU	3.591e-12	48.15	Calmodulin OS=Hordeum vulgare GN=CAM PE=2 SV=2	[more]
CALM_HELAN	3.591e-12	48.15	Calmodulin OS=Helianthus annuus GN=CAM PE=2 SV=3	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-102-001-C03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY665520 ID=EY665520; Name=EY665520; organism=Citrus sinensis; type=EST; length=885bp
CCACGCGTCCGGCCTTCAGCTTGTTTGACTGTGATGTGGACAGATGCCTT
ACCACCAAGGAGCTTGTTGCTGTCTATGACGCCCCTGGGGCTTACCCCCA
CTGAGGGTGACCTCCACAACATGATCAATGAACTGTATGCTGATGACCAT
GGAACTCTTCATGTTCCTGAATACCTTATCCTCTTGGACCCGAACATGCT
TGATTGCCACTCTTGGGACGAGCTTACCTATGCCTTCCCCTGTTATCTGA
CATGACTTGAGAGGTCTCTTCTCATCTACTGAGATGCTCCAAGATATCAC
AATTCTATCAGAGAAGCTTCATCGCTCCTCAACTTATGAGACTCTCTTCG
CTCCTGATGCTTATGCTGATGCTCACATAACTTATCAGGAACTTGCCCAC
GTCCTTCTGCACCATGCATGCCCTCAACCCTCCTGTACTCACTGATGCGC
TGATCTCTGTATCAAGGTCTTCCTACGTCTCCCACATGCCATCAATATTA
TACTATCCATGAGGCTCTAGCTGACTGTCTGGATGGCCTCCTAATGATGA
TTGCACCGATCGTCCATATAAGAAAGCCTCTCTCTCGGCCATATGCCTGT
TGACTGGAAAAACTCCTCCTGCTTTATCAAAGTGCAAACACCTGCCACCA
TTAGATTGTGCGTGTCAGTATAGTAATCAGGAAAGTGGCCAGAGCAATGG
GGAGGTTGGCCATGCTCAGAGGGAAGAACTCCCGTACAACAGGGTCCCGG
GGAGAGAATACCCCCGAAATCGGGAATCCTCGGAACCTAGAGGTTTTAGG
GGTAGGATAGAGGGCGTAGGTTGGGGGGGTTCGGGGTAGAAGCTCGGGGG
GAGCTCGGCGGGCGTGCTTTCTCTCCTCGGAAACC