CX674336

Overview
NameCX674336
Unique NameCX674336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4036 contig Csv1_Contig4036:15..896. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.765e-95
Identity = 166/200 (83.00%), Postives = 181/200 (90.50%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLGANSLLDIVVFGRACANRVAE  +PGEKQKPL+ +AGE+T+AWLDK+RN+NGS+PTSKIRLNMQRVMQNNAAVFRTQETLEEGC+LI KAWES+HDVK++DRSLIWN+D            NACITMHSAEARKESRGAHAREDFTKRDDE WMKH+LGYWENEKVRL YRPVHMNTLD E+ESFPPKARVY
Sbjct:  431 SVHGANRLGANSLLDIVVFGRACANRVAETAKPGEKQKPLQKSAGEKTIAWLDKLRNANGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCKLITKAWESYHDVKISDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKHSLGYWENEKVRLAYRPVHMNTLDSEVESFPPKARVY 630          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 7.529e-93
Identity = 163/200 (81.50%), Postives = 180/200 (90.00%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLGANSLLDIVVFGRACANRVAEI +PGEKQKPLE +AGE+T+AWLD++RNSNGS+PTS IRLNMQR+MQNNAAVFRTQETLEEGCQLIDKAWESF DV++ DRS+IWN+D            NA ITMHSAEARKESRGAHAREDFTKR+D  WMKHTLGYWE+EKVRLDYRPVHM+TLDDEI++FPPKARVY
Sbjct:  435 SVHGANRLGANSLLDIVVFGRACANRVAEISKPGEKQKPLEKDAGEKTIAWLDRLRNSNGSLPTSTIRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTKREDGEWMKHTLGYWEDEKVRLDYRPVHMDTLDDEIDTFPPKARVY 634          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 1.087e-91
Identity = 160/200 (80.00%), Postives = 176/200 (88.00%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLGANSLLDIVVFGRACANRVAEIQ+PGEK KPLE +AGE+++ WLD+IRNSNGS+PTSKIRLNMQRVMQNNAAVFRTQETLEEGC LIDK W+SF DVK+TDRS+IWN+D            NACITMHSAEARKESRGAHAREDFTKRDD NWMKHTLGYWE   V+L+YRPVHM TLDDE+++FPPK RVY
Sbjct:  433 SVHGANRLGANSLLDIVVFGRACANRVAEIQKPGEKLKPLEKDAGEKSIEWLDRIRNSNGSLPTSKIRLNMQRVMQNNAAVFRTQETLEEGCDLIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDFTKRDDANWMKHTLGYWEEGNVKLEYRPVHMKTLDDEVDTFPPKPRVY 632          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 6.231e-55
Identity = 117/204 (57.35%), Postives = 140/204 (68.63%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWES-FHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLD-DEIESFPPKARVY 880
            SVHGANRLGANSLLDIVVFGRA AN +          KPL  NAGE ++A +D IR SNG+  T++IRL MQ++MQ NAAVFR  + L+EG +LIDK   S  +D+K TDR++IWNTD             A +TMHSAEARKESRGAHARED+ +RDD NWMKHTL Y +    KV L+YRPV   TLD  E+E+  P  RVY
Sbjct:  423 SVHGANRLGANSLLDIVVFGRAVANEIENTLAKDTPHKPLPPNAGEESIANIDAIRFSNGTRSTAEIRLEMQKIMQRNAAVFRDGQVLKEGVELIDKCARSLINDLKTTDRTMIWNTDLIESLELQNLMTQAVLTMHSAEARKESRGAHAREDYKERDDANWMKHTLSYLDVNTGKVTLNYRPVVSETLDQSEMETIKPFKRVY 626          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.004e-53
Identity = 103/201 (51.24%), Postives = 142/201 (70.65%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLG+NSLLD+VVFGR+ A + AE+ +P    KP+   A E+ ++  DKIR+S+G+I  + +RL MQR MQ++A+VFRTQE L+EG ++I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D+ WM+HTL G  E  KV LDY+PV + TL DE+++ PP  RVY
Sbjct:  396 SVHGANRLGSNSLLDLVVFGRSAALKAAELIKPASPHKPVSEEALEKIISRFDKIRHSSGNISVADLRLKMQRTMQSHASVFRTQEVLDEGAEMISEIRSGYKDIKVNDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDKEWMQHTLSGVDEAGKVVLDYKPVTLTTLSDEVKAIPPAKRVY 596          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 207.994 bits (528), Expect = 5.832e-53
Identity = 117/220 (53.18%), Postives = 145/220 (65.91%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDE-----------------NWMKHTLGYWENE--KVRLDYRPVHMNTLD-DEIESFPPKARVY 880
            SVHGANRLGANSLLD+VVFGRACA  +AEI  PGEK  PL+ NAGE +VA LDK+R +NGS  TS+IRLNMQ+ MQ++AAVFRT + L+EGC  ++  ++S  D+K  DR ++WNTD            NA  T+ SAEARKESRGAHAREDF  R DE                 +W KHTL Y + E  KV L+YRPV  ++LD ++  + PP  R Y
Sbjct:  442 SVHGANRLGANSLLDLVVFGRACALTIAEIDTPGEKLSPLKPNAGEASVANLDKMRYANGSTRTSEIRLNMQKTMQSHAAVFRTGDVLKEGCVKMESVYKSMDDIKTFDRGIVWNTDLVETLELQNLMLNAVQTIVSAEARKESRGAHAREDFKDRVDEYDYSKPLQGQVKKPFEQHWRKHTLSYVDPETGKVTLEYRPVIDSSLDAEDCAAIPPAIRSY 661          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSX_YEAST (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Saccharomyces cerevisiae GN=YJL045W PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.100e-51
Identity = 107/203 (52.71%), Postives = 139/203 (68.47%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLDD-EIESFPPKARVY 880
            SVHGANRLGANSLLD+VVFGRA AN +A+  +PG   KPL +N G  ++A LDK+RN+ GS+ TS+IRLNMQR MQ + +VFRTQ+TL+EG + I +  ++F DV ++D+S+IWN+D             A  T  SA  RKESRGAHARED+ KRDD NW KHTL + +  +  V++ YR V  +TLD+ E    PP  R Y
Sbjct:  432 SVHGANRLGANSLLDLVVFGRAVANTIADTLQPGLPHKPLASNIGHESIANLDKVRNARGSLKTSQIRLNMQRTMQKDVSVFRTQDTLDEGVRNITEVDKTFEDVHVSDKSMIWNSDLVETLELQNLLTCATQTAVSASKRKESRGAHAREDYAKRDDVNWRKHTLSWQKGTSTPVKIKYRNVIAHTLDENECAPVPPAVRSY 634          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.179e-51
Identity = 100/201 (49.75%), Postives = 140/201 (69.65%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLG+NSLLD+VVFGR+ A + AE+ +P    + ++  + E+ +   DK+R++NG+I  +++RL MQR MQ++A+VFRTQE L+EG  +I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+DE+WMKHTL    E  KV LDY+PV + TL DE+ + PP  RVY
Sbjct:  396 SVHGANRLGSNSLLDLVVFGRSSALKAAELIKPASPHRSIKEESLEKIINRFDKVRHANGNILVAELRLKMQRTMQSHASVFRTQEVLDEGAGMISEIRSGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDEDWMKHTLSSIDEAGKVVLDYKPVTLTTLTDEVTAVPPVKRVY 596          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.129e-51
Identity = 100/201 (49.75%), Postives = 138/201 (68.66%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLG+NSLLD+VVFGR+ A + AE+  P    KP++  + E+ +   DK+R++NG+I  + +RL MQR MQ++A+VFRTQE L+EG  +I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D +WMKHTL    E  K+ +DY+PV + TL DEI + PP  RVY
Sbjct:  396 SVHGANRLGSNSLLDLVVFGRSSALKAAELISPASPHKPIKEASLEKIINRFDKVRHANGNILVADLRLKMQRTMQSHASVFRTQEVLDEGAGMISEIRNGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDGDWMKHTLSSIDEAGKIVIDYKPVTLTTLTDEISAIPPAKRVY 596          
BLAST of CX674336 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 7.129e-51
Identity = 110/218 (50.46%), Postives = 138/218 (63.30%), Query Frame = -3
Query:  281 SVHGANRLGANSLLDIVVFGRACANRVAEIQRPGEKQKPLENNAGERTVAWLDKIRNSNGSIPTSKIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDD-----------------ENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 880
            SVHGANRLGANSLLD+VVFGRACA  +AE  +PGE    ++ NAGE +VA LDK+R +NGS  TS+IR+NMQ+ MQN+AAVFRT   L+EGC+ +     S  D+K  DR ++WNTD             A  T++ AEARKESRGAHARED+  R D                 E+W KHTL Y + + KV L+YRPV   TL+++  S PP  R Y
Sbjct:  448 SVHGANRLGANSLLDLVVFGRACALSIAESCKPGEAVPSIKENAGEESVANLDKLRYANGSTRTSEIRINMQKTMQNHAAVFRTGSVLKEGCEKLSVINSSMDDIKTFDRGIVWNTDLVETLELQNLMLCALQTINGAEARKESRGAHAREDYKVRIDEYDFSKPLQGQQKKSFNEHWRKHTLSYVDKKGKVSLEYRPVIDTTLNEDCASVPPAIRSY 665          
The following BLAST results are available for this feature:
BLAST of CX674336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
DHSA_ORYSJ2.765e-9583.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA1_ARATH7.529e-9381.50Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH1.087e-9180.00Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DICDI6.231e-5557.35Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICBR2.004e-5351.24Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_DANRE5.832e-5353.18Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSX_YEAST1.100e-5152.71Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICCN4.179e-5149.75Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICFE7.129e-5149.75Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSAA_XENLA7.129e-5150.46Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5G12_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G12-M23-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674336 ID=CX674336; Name=CX674336; organism=Citrus sinensis; type=EST; length=882bp
TTTTTTGCAAAAGCCAAAATATATTATTATTAATTTAACAATGAGTTTAA
ACACCTATCCAGCCGTCCAACAACCACAAAGCTTATTACCCGCGCTTAAG
CATGAACAAAATTCAAACTCTGGTTGAAATTGATAGAACCTTGCAATATT
AGAAGTTTAATTCTGATCAATGCAATGATTATTTTGCCAAAATGCTGTAG
CTACAACAATTTATTGAATTCCCCCCTCTCTTCCTTCCTTTCTCCAGTTT
TTCTTATTTTTGGGGAGAGCAGATAGATCAATATACACGAGCTTTAGGTG
GGAAGGACTCGATTTCATCGTCTAGCGTATTCATGTGAACTGGTCTGTAA
TCCAATCGTACCTTCTCATTCTCCCAATATCCCAGAGTGTGCTTCATCCA
GTTCTCATCATCTCTTTTCGTAAAATCTTCACGTGCATGAGCTCCTCTAC
TCTCTTTCCTGGCTTCAGCAGAATGCATGGTGATGCATGCATTTATCAAA
AGGTTTTCCAACTCTATAGTTTCTATCAAGTCAGTGTTCCATATCAAACT
ACGATCTGTCAACTTAACATCATGGAAACTCTCCCATGCCTTGTCAATTA
ATTGACAACCTTCCTCCAATGTTTCCTGTGTTCGGAAGACAGCGGCATTA
TTTTGCATCACGCGTTGCATATTCAACCGAATTTTTGAAGTTGGTATTGA
ACCATTTGAATTTCTTATTTTGTCCAGCCAGGCAACGGTCCTCTCACCAG
CATTGTTTTCTAAAGGCTTTTGTTTCTCCCCTGGCCTCTGGATTTCTGCA
ACTCTATTTGCACAAGCTCGACCGAAAACAACAATGTCAAGAAGGGAATT
TGCACCCAGCCGGTTGGCACCATGAACTGATG
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