CX674331

Overview
NameCX674331
Unique NameCX674331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674331_ssr408 microsatellite CX674331_ssr408:408..419. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5633 contig Csv1_Contig5633:20..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.054e-61
Identity = 125/218 (57.34%), Postives = 144/218 (66.06%), Query Frame = 1
Query:  118 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD-----RSPS 756
            MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH                                             SR SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT  EDMKYA++KLDDTEFRN ++ G + V+ YD     RSPS
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGP-------------SRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVREYDSRKDSRSPS 205          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.360e-41
Identity = 96/188 (51.06%), Postives = 113/188 (60.11%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPP--------------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 181          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.083e-41
Identity = 95/188 (50.53%), Postives = 113/188 (60.11%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.026e-41
Identity = 94/188 (50.00%), Postives = 113/188 (60.11%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPP-SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 201          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.259e-41
Identity = 93/194 (47.94%), Postives = 116/194 (59.79%), Query Frame = 1
Query:  124 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            G   + +YVGNLP D+RE EVED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE                                                 R + YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD  GT GVV++T  ED+KYA+RKLDDT+FR+
Sbjct:    5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTRGVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGP----------QRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRS 184          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.171e-40
Identity = 95/188 (50.53%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY++DG RLRVE                                                SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPP----------SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 191          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.452e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.452e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 4.452e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674331 vs. ExPASy Swiss-Prot
Match: SFRS1_HUMAN (Splicing factor, arginine/serine-rich 1 OS=Homo sapiens GN=SFRS1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 4.452e-40
Identity = 93/188 (49.47%), Postives = 112/188 (59.57%), Query Frame = 1
Query:  142 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPP--------------------SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
The following BLAST results are available for this feature:
BLAST of CX674331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SFRS1_ARATH2.054e-6157.34Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFR1B_DANRE2.360e-4151.06Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK3.083e-4150.53Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFRS1_XENTR4.026e-4150.00Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
RSP3_CAEEL5.259e-4147.94Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1A_DANRE1.171e-4050.53Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_PONAB4.452e-4049.47Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG4.452e-4049.47Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE4.452e-4049.47Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]
SFRS1_HUMAN4.452e-4049.47Splicing factor, arginine/serine-rich 1 OS=Homo sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5G09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G09-M17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674331 ID=CX674331; Name=CX674331; organism=Citrus sinensis; type=EST; length=758bp
CTCCATCGGAAGCAGCGGTCGTTTTCGGTAAGGACCGGCGGGTCGTCACG
TGGTGGTTCAGCGACGCTTCTCCTGCTCATAAATCTTCGTGAAATTTTAT
AGTCCTTACCATCAGAAATGAGTGGTCGTTTTTCTCGTACAATCTATGTT
GGCAACCTGCCCTCTGATATAAGAGAATATGAAGTTGAGGATCTCTTTTA
CAAGTATGGCCGTATATTGGATATTGAATTAAAGATCCCCCCTCGCCCAC
CATGTTATTGTTTTGTTGAGTTTGAGAATGCTCGTGATGCCGAAGATGCT
ATTAGAGGTCGTGATGGCTATAACTTTGATGGTTGTCGTTTAAGGGTTGA
GCTCGCCCATGGTGGTAGTGGTAGAGGTCCATCATCAAGTGATCGTCGTG
GTGGCTATGGTGGTGGTGGTGCTGCTGCTGGTGGTGCTGGTGCTGGTGCT
GGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTCGTTTTGGCATCTCACG
CCATTCTGAATATCGAGTTATTGTGCGCGGACTTCCTTCTTCAGCTTCCT
GGCAGGATTTAAAGGATCATATGCGAAAAGCAGGCGATGTTTGTTTTGCT
GAAGTTTCCCGTGACAGTGAGGGGACTTATGGGGTCGTTGATTATACTAA
TCCTGAAGACATGAAATATGCAATTCGGAAACTTGATGACACTGAATTTA
GAAATCCTTGGGCAAGAGGGCGCATAACGGTGAAAAGATACGATCGTAGT
CCATCGAG
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