CX674330

Overview
NameCX674330
Unique NameCX674330
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX674330_ssr23 microsatellite CX674330_ssr23:23..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.169e-28
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = -2
Query:  497 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 742
            G SR SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT  EDMKYA++KLDDTEFRN ++ G + V+
Sbjct:  112 GPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVR 193          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  116 SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  115 SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 181          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.212e-20
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  125 SRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 191          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.502e-20
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  135 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 201          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 7.185e-20
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = -2
Query:  527 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 742
            G  R + YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD  GT GVV++T  ED+KYA+RKLDDT+FR+
Sbjct:  116 GPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRS 184          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS9_RAT (Splicing factor, arginine/serine-rich 9 OS=Rattus norvegicus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:  106 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 172          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:  107 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 173          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS9_HUMAN (Splicing factor, arginine/serine-rich 9 OS=Homo sapiens GN=SFRS9 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.566e-19
Identity = 43/70 (61.43%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            +R S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:  106 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFRS 172          
BLAST of CX674330 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 6.083e-19
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = -2
Query:  527 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 736
            SR SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:  116 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
The following BLAST results are available for this feature:
BLAST of CX674330 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
SFRS1_ARATH7.169e-2870.73Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
SFRS1_CHICK4.212e-2070.00Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFR1B_DANRE4.212e-2070.00Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFR1A_DANRE4.212e-2070.00Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR5.502e-2068.57Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
RSP3_CAEEL7.185e-2066.67Probable splicing factor, arginine/serine-rich 3 O... [more]
SFRS9_RAT3.566e-1961.43Splicing factor, arginine/serine-rich 9 OS=Rattus ... [more]
SFRS9_MOUSE3.566e-1961.43Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS9_HUMAN3.566e-1961.43Splicing factor, arginine/serine-rich 9 OS=Homo sa... [more]
SFRS1_PONAB6.083e-1967.14Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_5G09_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G09-M17-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674330 ID=CX674330; Name=CX674330; organism=Citrus sinensis; type=EST; length=794bp
TTTTTTTTTTTTTTTTTCACATTAATAATAATAATTATTAAAAAAAAAAA
GAAATGCGTCCAACCATTGATCTTGAAAATTCCTCCAATAAAATTAGATA
TTTAAAGTCTCAACAAATTTAAAAAGATAGGCACTACCAAGCCATAAAAG
CAAATAACTAGTCTTAGGTTTTTGCTAAAACATTTCCAAGTAAAAATTGT
CCACTCAAATATTGATTACTTGCCCTCAAACTCATCTAAGCAAACCAGGC
TATGAAAAGTTTGGACATCAGTTATAAAAATCAGCCACTTCCAGAACGCA
CCTTATCTGGTGATACTGACCGCGACCTTGATCTTGCCCTGGACGACTTG
ACAGGAGAAGCAAACATAGATCTTGACACTGATCTGGAAACAGAACGCTC
TAATGATTTACTTCTATTTCTTCGCACAATTCTGCTTCTGCTTCGGCTTC
TACTTCGGCTTCTACTGCGGCTTCTCGATGGACTACGATCGTATCTTTTC
ACCGTTATGCGCCCTCTTGCCCAAGGATTTCTAAATTCAGTGTCATCAAG
TTTCCGAATTGCATATTTCATGTCTTCAGGATTAGTATAATCAACGACCC
CATAAGTCCCCTCACTGTCACGGGAAACTTCAGCAAAACAAACATCGCCT
GCTTTTCGCATATGATCCTTTAAATCCTGCCAGGAAGCTGAAGAAGGAAG
TCCGCGCACAATAACTCGATATTCAGAATGGCGTGAGATGCCAAAACGAC
CAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCACCA
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