CX674328

Overview
NameCX674328
Unique NameCX674328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674328 vs. ExPASy Swiss-Prot
Match: VPS33_ARATH (Vacuolar protein sorting-associated protein 33 homolog OS=Arabidopsis thaliana GN=VPS33 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.851e-53
Identity = 110/163 (67.48%), Postives = 125/163 (76.69%), Query Frame = -1
Query:  316 NNLEKAGLFKKQETKSNWQLVKRALQL-VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSXXXXXXXXXXXFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSENLG 801
            NNLEKAGL KKQE KSNW  VKR L+L VEDTDT+ PNDI+YV+SGYAPLSIRL+Q AI SGWRPME+ILKLLPGPH ETKR GF SSPS D   G S+    V DGRRS           FAEISALR+L+++EGMAYD+IV TTKI++G +L ETF E LG
Sbjct:  433 NNLEKAGLLKKQEFKSNWLTVKRTLKLIVEDTDTSRPNDIAYVYSGYAPLSIRLIQQAIHSGWRPMEDILKLLPGPHLETKRSGFPSSPSVDSLHGASNG---VADGRRSIVLVVFIGGVTFAEISALRYLASKEGMAYDLIVATTKIVNGATLIETFMEKLG 592          
BLAST of CX674328 vs. ExPASy Swiss-Prot
Match: VP33A_MOUSE (Vacuolar protein sorting-associated protein 33A OS=Mus musculus GN=Vps33a PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.884e-25
Identity = 67/161 (41.61%), Postives = 94/161 (58.39%), Query Frame = -1
Query:  325 NNLEKAGLFKKQET-KSNWQLVKRALQL-VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSXXXXXXXXXXXFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 801
            NNLEKAGL K Q   ++N+  +++ L+L ++D +  NP DISYV+SGYAPLS+RL Q   R GWR +EE+L++LPGPH+E ++          +  GL     K   G              FAEI+ALRFLS  E    + ++ TTK+++GNS  E   E
Sbjct:  447 NNLEKAGLLKAQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGLQK---KRQPGENRVTLVFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGNSWIEALME 595          
BLAST of CX674328 vs. ExPASy Swiss-Prot
Match: VP33A_RAT (Vacuolar protein sorting-associated protein 33A OS=Rattus norvegicus GN=Vps33a PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.686e-24
Identity = 67/162 (41.36%), Postives = 94/162 (58.02%), Query Frame = -1
Query:  325 NNLEKAGLFKKQET-KSNWQLVKRALQL-VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGD-GRRSXXXXXXXXXXXFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 801
            NNLEKAGL K Q   ++N+  +++ L+L ++D +  NP DISYV+SGYAPLS+RL Q   R GWR +EE+L++LPGPH+E +             Q L + + K    G              FAEI+ALRFLS  E    + ++ TTK+I+G+S  E   E
Sbjct:  446 NNLEKAGLLKAQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEER-------------QPLPTGVQKKRQPGENRVTLVFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLINGSSWLEALME 594          
BLAST of CX674328 vs. ExPASy Swiss-Prot
Match: VP33A_HUMAN (Vacuolar protein sorting-associated protein 33A OS=Homo sapiens GN=VPS33A PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.864e-23
Identity = 65/161 (40.37%), Postives = 93/161 (57.76%), Query Frame = -1
Query:  325 NNLEKAGLFKKQET-KSNWQLVKRALQL-VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRSGWRPMEEILKLLPGPHYETKRGGFSSSPSFDMSQGLSSSIDKVGDGRRSXXXXXXXXXXXFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAETFSE 801
            +NLEKAGL K Q   ++N+  +++ L+L ++D +  NP DISYV+SGYAPLS+RL Q   R GWR +EE+L++LPGPH+E ++          +  GL     K   G              FAEI+ALRFLS  E    + ++ TTK+++G S  E   E
Sbjct:  445 HNLEKAGLLKPQTGGRNNYPTIRKTLRLWMDDVNEQNPTDISYVYSGYAPLSVRLAQLLSRPGWRSIEEVLRILPGPHFEERQ---------PLPTGLQK---KRQPGENRVTLIFFLGGVTFAEIAALRFLSQLEDGGTEYVIATTKLMNGTSWIEALME 593          
BLAST of CX674328 vs. ExPASy Swiss-Prot
Match: VP33A_DROME (Vacuolar protein sorting-associated protein 33A OS=Drosophila melanogaster GN=car PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.284e-13
Identity = 52/164 (31.71%), Postives = 91/164 (55.49%), Query Frame = -1
Query:  334 NNLEKAGLFKKQETKSNWQLVKRALQL-VEDTDTANPNDISYVFSGYAPLSIRLVQNAIRS-GWRPMEEILKLLPGPHYETKR------GGFSSSPSFDMSQGLSSSIDKVGDGRRSXXXXXXXXXXXFAEISALRFLSAQEGMAYDVIVGTTKIISGNSLAET 801
            +NLEK+GL   Q     + ++++ L L V+D     P DISYV S YAPL+ R+V+++++  GW+ ++  +  LPGP +E  +      GG  +  +  +S+G   ++ +V                 FAEI+ALRFL+AQE    + ++ TTK+++ +S  ++
Sbjct:  459 SNLEKSGLLHLQTESRAYSVLRKTLHLTVDDNVEIEPKDISYVHSFYAPLTARIVEHSLKPLGWQTLKSQINNLPGPTFEDFQAQLVGIGGRHTVTT--VSEGSLLNVPRV-------VLVCFVGGCTFAEIAALRFLAAQEDNNVEFLIATTKVVNKHSFLDS 613          
The following BLAST results are available for this feature:
BLAST of CX674328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VPS33_ARATH3.851e-5367.48Vacuolar protein sorting-associated protein 33 hom... [more]
VP33A_MOUSE9.884e-2541.61Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_RAT1.686e-2441.36Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_HUMAN1.864e-2340.37Vacuolar protein sorting-associated protein 33A OS... [more]
VP33A_DROME2.284e-1331.71Vacuolar protein sorting-associated protein 33A OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_5G08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G08-M15-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674328 ID=CX674328; Name=CX674328; organism=Citrus sinensis; type=EST; length=801bp
TTTTTTTTTTTCAAGTGAAGAATCAGTACTAATATAAACAATTTTAAACA
AAAGATTTGTAGATCAAAGATCAAAGAGAATACACAGAATTGAATCAGCT
TAAAAATCTCGAAGCGCCTAAAGTGACTTGAAAAATGACAAGCTATAACC
CCAGAATTGTATCTTGTTCATCCTACCCAACCATCCTACATCAACAAGGC
TCACTTTCTGACACTAACGTATATAGAATACATCCCCAACAAACAGTATA
TACAAATAAGAAAACATAAAATTTGGTCGTTTCAAATATTAGACTGAAAA
GAGCTATACAAGTCAACCCAAATTCTCCGAGAATGTTTCAGCCAAGCTAT
TACCACTAATGATCTTCGTGGTCCCAACTATCACATCATATGCCATCCCT
TCCTGAGCACTGAGAAATCGAAGAGCAGAAATTTCTGCAAATGTTACCCC
TCCAACAAAGACTACAAGTACTAGGGAACGCCTTCCATCACCAACTTTGT
CTATCGAGGAGGACAGCCCCTGCGACATGTCAAATGATGGACTACTTGAG
AACCCACCTCTTTTTGTTTCATAATGGGGTCCGGGCAACAGCTTCAGAAT
TTCTTCCATGGGACGCCATCCAGATCGAATGGCATTCTGAACAAGGCGGA
TACTAAGAGGAGCATATCCGGAGAAGACGTAGGAGATATCGTTCGGGTTT
GCTGTGTCAGTATCTTCAACAAGTTGCAGAGCACGCTTAACCAACTGCCA
GTTGCTTTTTGTCTCCTGTTTTTTGAACAATCCCGCTTTCTCTAAATTGT
T
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