CX674324

Overview
NameCX674324
Unique NameCX674324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12570 contig Csv1_Contig12570:87..954. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX674324 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.678e-68
Identity = 116/188 (61.70%), Postives = 154/188 (81.91%), Query Frame = -2 
Query:  199 VIGPQYCLPYPVDLSIVRKFLTLTDGSFAVTDINDNLMFKVKEKLISLHDKRTLLDPAGNPIVTITEKVFSLHEKHFVFRGASTDTKDLLFTVERSSVIQLKTTLNVYLASNTKQDVCDFKIKGSWTEKSCVVYAGESNTIVAQMHKKTTAGSVLLNKDRFTVTVYPNIDYAFIVALIVILDDINGDD 762
            V+ P+YC PYP+D++IVRK ++LTDG+F +TD+N NL+FKVKE +  LHDKR LLD +G P+VT+ EK+ S+H++  VFRG STD +DLL+TV+RSS++QLKT L+V+L  N  +  CDF++KGSW E+SCVVYAGES+ IVAQMH+K T  SV L KD F+VTVYPN+DYAFI +L+VILDD+N +D
Sbjct:   27 VVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
The following BLAST results are available for this feature:
BLAST of CX674324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH3.678e-6861.70UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_5G06_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5G06-M11-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674324 ID=CX674324; Name=CX674324; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTCGAACAAAAGCTATAGCTATAGCCTTTATTGAAAGCAAAAGTA
CTTTTAACTAGCTGGCTACTGCAAAGGGTTTTGAAATCAAGGAAAACCAA
AGCCACGGATACAGCATCTTACTTGAATTACATCAAACAGACACACTATT
TTTCACTTTATAGTAGCAATTTCAAATCTAAATTATCTCACTCGTATCAT
CATCACCGTTGATATCATCGAGGATCACGATCAGGGCTACTATAAACGCA
TAGTCTATGTTCGGATAAACTGTCACAGTGAACCTGTCCTTGTTGAGCAA
GACACTGCCCGCAGTTGTCTTTTTGTGCATCTGGGCAACAATTGTGTTTG
ACTCTCCAGCATATACAACACAAGATTTTTCAGTCCAGCTGCCTTTGATC
TTGAAATCGCAAACATCTTGTTTGGTGTTACTTGCCAGGTAGACGTTCAA
AGTGGTCTTCAATTGGATCACTGAAGATCTTTCCACAGTAAAGAGAAGAT
CTTTAGTGTCTGTGCTAGCCCCCCTGAATACAAAATGCTTCTCGTGCAAG
GAAAAAACTTTCTCTGTTATGGTGACAATAGGGTTGCCAGCAGGATCAAG
TAGAGTCCGCTTGTCATGGAGGCTTATAAGTTTTTCTTTCACTTTGAACA
TGAGATTGTCATTGATATCAGTGACAGCAAAACTGCCATCGGTGAGGGTT
AAAAACTTTCTAACGATGGATAGATCAACGGGATAAGGAAGGCAATACTG
AGGGCCGATTACCGAAACCGGATTGGAATATATTGTTGGTGCTGGAGTTG
GCGCTGGAATATTAATTGGCTGCTGTGGAATTTGCTGTGGGTTTGGTTGC
TGTGGCATCTGGTCTGCA
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