CX674313

Overview
NameCX674313
Unique NameCX674313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length816
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA3_ARATH (DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2)

HSP 1 Score: 236.498 bits (602), Expect = 1.355e-61
Identity = 122/165 (73.94%), Postives = 136/165 (82.42%), Query Frame = 3 
Query:  321 RGGMLETSTQICNFXXXXXXXXXXXXXXXXEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            R  ++ TS Q+  F                EE MSKK++ALQQALDQITSSFGKGSIM+LGR+V+PR+VPV STGSFALD+ALG GGLPKGRVVEIYGPEASGKTTLALHVIAEAQ+QGG CVF+DAEHALD SLA+ IGV TENLLL+QPDCGEQALSLVDTLI
Sbjct:   22 RRSVVGTSFQLRGFAAKAKKKSKSDGNGSSEEGMSKKEIALQQALDQITSSFGKGSIMYLGRAVSPRNVPVFSTGSFALDVALGVGGLPKGRVVEIYGPEASGKTTLALHVIAEAQKQGGTCVFVDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLI 186
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_OCHA4 (Protein recA OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=recA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.708e-43
Identity = 87/135 (64.44%), Postives = 102/135 (75.56%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            EEN   K  AL  AL QI  +FGKGSIM LG++     +  V TGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EENSVDKTKALDAALSQIERAFGKGSIMRLGKNAPVIEIETVPTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUSU (Protein recA OS=Brucella suis GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUSI (Protein recA OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUME (Protein recA OS=Brucella melitensis GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUMB (Protein recA OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUC2 (Protein recA OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUAB (Protein recA OS=Brucella abortus GN=recA PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUA2 (Protein recA OS=Brucella abortus (strain 2308) GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
[Close]
BLAST of CX674313 vs. ExPASy Swiss-Prot
Match: RECA_BRUA1 (Protein recA OS=Brucella abortus (strain S19) GN=recA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.324e-43
Identity = 87/135 (64.44%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:  411 EENMSKKDLALQQALDQITSSFGKGSIMWLGRSVTPRHVPVVSTGSFALDIALGTGGLPKGRVVEIYGPEASGKTTLALHVIAEAQRQGGYCVFIDAEHALDPSLAETIGVKTENLLLAQPDCGEQALSLVDTLI 815
            E+N   K  AL  AL QI  +FGKGSIM LG++     +  VSTGS +LDIALG GGLPKGR+VEIYGPE+SGKTTLALH IAEAQ++GG C F+DAEHALDP  A  +GV  ENLL++QPD GEQAL + DTL+
Sbjct:   10 EDNSVDKTKALDAALSQIERAFGKGSIMRLGQNDQVVEIETVSTGSLSLDIALGVGGLPKGRIVEIYGPESSGKTTLALHTIAEAQKKGGICAFVDAEHALDPVYARKLGVDLENLLISQPDTGEQALEITDTLV 144
The following BLAST results are available for this feature:
BLAST of CX674313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA3_ARATH1.355e-6173.94DNA repair protein recA homolog 3, mitochondrial O... [more]
RECA_OCHA43.708e-4364.44Protein recA OS=Ochrobactrum anthropi (strain ATCC... [more]
RECA_BRUSU6.324e-4364.44Protein recA OS=Brucella suis GN=recA PE=3 SV=1[more]
RECA_BRUSI6.324e-4364.44Protein recA OS=Brucella suis (strain ATCC 23445 /... [more]
RECA_BRUME6.324e-4364.44Protein recA OS=Brucella melitensis GN=recA PE=3 S... [more]
RECA_BRUMB6.324e-4364.44Protein recA OS=Brucella melitensis biotype 2 (str... [more]
RECA_BRUC26.324e-4364.44Protein recA OS=Brucella canis (strain ATCC 23365 ... [more]
RECA_BRUAB6.324e-4364.44Protein recA OS=Brucella abortus GN=recA PE=3 SV=2[more]
RECA_BRUA26.324e-4364.44Protein recA OS=Brucella abortus (strain 2308) GN=... [more]
RECA_BRUA16.324e-4364.44Protein recA OS=Brucella abortus (strain S19) GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS10_5F09_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-5F09-K17-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674313 ID=CX674313; Name=CX674313; organism=Citrus sinensis; type=EST; length=816bp
GTCACATACAGTGTTTCTGTGTGGGAGTGGGGCACTTGAACCAGAGAAAA
TATTAAAATAGTTTCAGTAAAAAGGGACGGAACCCAAAAGTCCAAAACCC
CCAAAACCCTAAGAACATAAACAATAAACACACCACACGTTCAATACTTT
GGTATTAAATGGAATAAATTGTAGTTGTTCACCATTAATTTTTTTGTTGC
CATTTATTTTTGGTTAGTTTTGGTTTGTGAGTCTCCATGGCGAGGCTCCT
TCGAAACGCTTCTTTACTTAGACGCTGTCTTCTCTCAGTCTCACCACCAC
ACCCACATCCACAGAGCTTTAGGGGAGGGATGTTGGAAACTTCTACTCAG
ATTTGCAACTTTTCTTCCAAAAGTAAAAGAAAGTCTAAGTCTGATGGGAG
TGACTCTGGTGAAGAGAATATGTCCAAGAAAGATCTAGCCCTACAACAAG
CATTGGATCAGATTACTAGCTCATTTGGGAAAGGGTCTATTATGTGGCTT
GGTCGGTCTGTCACTCCCAGACATGTTCCCGTTGTGTCCACAGGTTCTTT
TGCACTTGATATAGCACTAGGAACTGGTGGACTTCCAAAGGGACGTGTTG
TTGAGATATATGGTCCTGAGGCTTCTGGGAAAACAACTCTTGCTCTACAT
GTAATTGCTGAAGCACAAAGACAAGGAGGTTACTGTGTTTTTATCGATGC
TGAGCATGCTCTTGATCCATCTCTAGCTGAGACTATTGGAGTAAAGACAG
AGAATTTGCTTCTTGCACAACCTGATTGTGGTGAACAGGCTCTCAGTCTT
GTGGATACGCTGATCC
back to top