CV886054

Overview
NameCV886054
Unique NameCV886054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV886054_ssr331 microsatellite CV886054_ssr331:331..342. BLAST: Citrus ESTs to Prunus persica proteins V1
CV886054_ssr350 microsatellite CV886054_ssr350:350..361. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1628 contig Csv1_Contig1628:18..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B2_ARATH (Elongation factor 1-beta 2 OS=Arabidopsis thaliana GN=At5g19510 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.830e-65
Identity = 128/224 (57.14%), Postives = 152/224 (67.86%), Query Frame = 3
Query:   57 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            MA+TFSDLHTE G+KS++++L+GK+YISG+QL+ DD+KVYAAV VKP+D+FPNAS+WY+SV+S +A SFPGKAVGV+                                                            VL+DVKPWDDETDMKKLEEAVR VEMPGLFWGASKLVPVGYGIKK+ IM TI+DDLVS D+LIE+ LT EP NEY+QSCDIVAFNKI
Sbjct:    1 MAVTFSDLHTEEGVKSVEEHLAGKTYISGDQLSVDDVKVYAAVPVKPSDAFPNASKWYESVASQLAKSFPGKAVGVQFGGSAAAAPAVEAEAPAAAADDDDDMDLFGDETEEEKKAAEEREAAKKDTKKPKESGKSSVLMDVKPWDDETDMKKLEEAVRGVEMPGLFWGASKLVPVGYGIKKLTIMFTIVDDLVSPDNLIEDFLTSEPNNEYIQSCDIVAFNKI 224          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_ORYSJ (Elongation factor 1-beta OS=Oryza sativa subsp. japonica GN=Os07g0662500 PE=1 SV=3)

HSP 1 Score: 244.588 bits (623), Expect = 5.337e-64
Identity = 128/224 (57.14%), Postives = 148/224 (66.07%), Query Frame = 3
Query:   57 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            MA+TF+DLHT  GLK+L+Q+LSGK+Y+SGN ++KDDIKV+AAV  KP   FPNA+RWYD+V++ +A  FPGKAVGV                                                             VLLDVKPWDDETDMKKLEEAVRSV+M GL WGASKLVPVGYGIKK+QIM+TI+DDLVSVDSLIEEHLT EP NE+VQSCDIVAFNKI
Sbjct:    1 MAVTFTDLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAAALASRFPGKAVGVNLPGGGAASSAAAAAPAAKDADEDDDDLDLFGDETEEDKKAADERAASKASSKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCDIVAFNKI 224          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D2_ARATH (Elongation factor 1-delta 2 OS=Arabidopsis thaliana GN=At2g18110 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.569e-38
Identity = 73/87 (83.91%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VL+D+KPWDDETDMKKLEEAVRS++M GLFWGASKLVPVGYGIKK+ IM TI+DDLVS+D++IEE LTVEP NEYVQSCDIVAFNKI
Sbjct:  145 VLMDIKPWDDETDMKKLEEAVRSIQMEGLFWGASKLVPVGYGIKKLHIMCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D1_ARATH (Elongation factor 1-delta 1 OS=Arabidopsis thaliana GN=At1g30230 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 8.579e-38
Identity = 72/87 (82.76%), Postives = 83/87 (95.40%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VL+D+KPWDDETDMKKLEEAV+S++M GLFWGASKLVPVGYGIKK+QI+ TI+DDLVS+D++IEE LTVEP NEYVQSCDIVAFNKI
Sbjct:  145 VLIDIKPWDDETDMKKLEEAVKSIQMEGLFWGASKLVPVGYGIKKLQILCTIVDDLVSIDTMIEEQLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B1_ARATH (Elongation factor 1-beta 1 OS=Arabidopsis thaliana GN=At5g12110 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.260e-37
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VLL+VKPWDDETDMKKLEEAVRSV+MPGL WGASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE+HLT EP NEY+QS DIVAFNKI
Sbjct:  142 VLLEVKPWDDETDMKKLEEAVRSVQMPGLTWGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDHLTSEPNNEYIQSVDIVAFNKI 228          

HSP 2 Score: 123.25 bits (308), Expect = 1.793e-27
Identity = 56/77 (72.73%), Postives = 69/77 (89.61%), Query Frame = 3
Query:   57 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGVR 287
            MA+TFSDLHTE GLK+L+++L+GK+YISG+QL+ DD+KVYAAVL  P D FPNAS+WYDSV+SH+A SFPGKA GVR
Sbjct:    1 MAVTFSDLHTERGLKTLEEHLAGKTYISGDQLSVDDVKVYAAVLENPGDGFPNASKWYDSVASHLAKSFPGKADGVR 77          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D1_ORYSJ (Elongation factor 1-delta 1 OS=Oryza sativa subsp. japonica GN=Os07g0614500 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 1.239e-36
Identity = 73/87 (83.91%), Postives = 80/87 (91.95%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++   EP NEY+QSCDIVAFNKI
Sbjct:  143 VLLDVKPWDDETDMTKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCDIVAFNKI 229          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D_PIMBR (Elongation factor 1-delta OS=Pimpinella brachycarpa PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.760e-36
Identity = 71/87 (81.61%), Postives = 80/87 (91.95%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VLLDVKPWDDETDM KLEEAVRS++M GL WGASKLV VGYGIKK+QIM+TI+DDLVSVD L+E++LT EP NEY+QSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMTKLEEAVRSIKMDGLLWGASKLVAVGYGIKKLQIMLTIVDDLVSVDDLVEDYLTAEPANEYIQSCDIVAFNKI 226          

HSP 2 Score: 72.0182 bits (175), Expect = 4.741e-12
Identity = 32/63 (50.79%), Postives = 46/63 (73.02%), Query Frame = 3
Query:   57 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSS 245
            MA+TF DL +E+GL+ LD+YL  +SYISG Q +KDD+ V+AA+   P+  + N SRWY+ V +
Sbjct:    1 MAVTFYDLSSEAGLEKLDEYLLSRSYISGYQASKDDLAVHAALAKPPSSKYVNVSRWYNHVEA 63          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D_BETVU (Elongation factor 1-delta OS=Beta vulgaris PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.605e-36
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VLLDVKPWDDETDMKKLEEAVRSV+  GL  GASKLVPVGYGIKK+ IMMTI+DDLVSVD+LIE++LTVEP NEYVQSCDIVAFNKI
Sbjct:  145 VLLDVKPWDDETDMKKLEEAVRSVQQEGLTLGASKLVPVGYGIKKLTIMMTIVDDLVSVDNLIEDYLTVEPINEYVQSCDIVAFNKI 231          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1D2_ORYSJ (Elongation factor 1-delta 2 OS=Oryza sativa subsp. japonica GN=Os03g0406200 PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 3.605e-36
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VLLDVKPWDDETDM KLEEAVR+V+M GL WGASKLVPVGYGIKK+QIMMTI+DDLVSVDSLIE++   EP NE++QSCDIVAFNKI
Sbjct:  140 VLLDVKPWDDETDMAKLEEAVRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCDIVAFNKI 226          

HSP 2 Score: 70.0922 bits (170), Expect = 1.801e-11
Identity = 32/68 (47.06%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   57 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPS 260
            MAIT S++++E+GL+ LD+YL  +SYISG Q +KDD+ V+ ++   PA S+ N +RWYD +S+ +  S
Sbjct:    1 MAITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHISALLRSS 68          
BLAST of CV886054 vs. ExPASy Swiss-Prot
Match: EF1B_WHEAT (Elongation factor 1-beta OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.035e-32
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = 3
Query:  468 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVSVDSLIEEHLTVEPCNEYVQSCDIVAFNKI 728
            VL+D+KPWDDETDMKKLEEAVRSV+M GL WGASKL+PVGYGIKK+QIM+TIIDDL S    IEE L   P NEYVQSCDIVAFNKI
Sbjct:  132 VLMDIKPWDDETDMKKLEEAVRSVQMEGLTWGASKLMPVGYGIKKLQIMLTIIDDLASTP--IEEVLCEAPINEYVQSCDIVAFNKI 216          

HSP 2 Score: 105.145 bits (261), Expect = 5.053e-22
Identity = 46/76 (60.53%), Postives = 65/76 (85.53%), Query Frame = 3
Query:   57 MAITFSDLHTESGLKSLDQYLSGKSYISGNQLTKDDIKVYAAVLVKPADSFPNASRWYDSVSSHIAPSFPGKAVGV 284
            MA+TFSDLHT  GLK+L+ +L+GK+YISG+ +TKDD+KV+AAV +KP+  FPNA+RWYD+V++ ++  FPG+A GV
Sbjct:    1 MAVTFSDLHTADGLKALEAHLAGKTYISGDGITKDDVKVFAAVPLKPSAEFPNAARWYDTVAAAVSSRFPGQASGV 76          
The following BLAST results are available for this feature:
BLAST of CV886054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
EF1B2_ARATH2.830e-6557.14Elongation factor 1-beta 2 OS=Arabidopsis thaliana... [more]
EF1B_ORYSJ5.337e-6457.14Elongation factor 1-beta OS=Oryza sativa subsp. ja... [more]
EF1D2_ARATH6.569e-3883.91Elongation factor 1-delta 2 OS=Arabidopsis thalian... [more]
EF1D1_ARATH8.579e-3882.76Elongation factor 1-delta 1 OS=Arabidopsis thalian... [more]
EF1B1_ARATH3.260e-3786.21Elongation factor 1-beta 1 OS=Arabidopsis thaliana... [more]
EF1D1_ORYSJ1.239e-3683.91Elongation factor 1-delta 1 OS=Oryza sativa subsp.... [more]
EF1D_PIMBR2.760e-3681.61Elongation factor 1-delta OS=Pimpinella brachycarp... [more]
EF1D_BETVU3.605e-3686.21Elongation factor 1-delta OS=Beta vulgaris PE=2 SV... [more]
EF1D2_ORYSJ3.605e-3682.76Elongation factor 1-delta 2 OS=Oryza sativa subsp.... [more]
EF1B_WHEAT7.035e-3279.31Elongation factor 1-beta OS=Triticum aestivum PE=1... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_020G01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_020_T3_G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV886054 ID=CV886054; Name=CV886054; organism=Citrus sinensis; type=EST; length=854bp
CGATTATCCTGTGTTGAAGTTGTGCGCATCTTCTTGCCTCTGCCTTGAAG
ACTAAAATGGCCATCACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAA
GTCTCTTGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTAATCAAC
TGACAAAAGATGACATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCT
GATTCTTTCCCCAACGCCAGCAGGTGGTACGACAGCGTTTCTTCACATAT
CGCCCCAAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAG
GTGCTCCAGTTGACGCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGT
GATGATGATGATTTGGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAA
AGCAGCAGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAG
AGAGTGGAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAG
ACAGACATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGG
TCTCTTTTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGA
AGATGCAGATCATGATGACAATCATTGATGATCTTGTTTCTGTGGATTCA
CTCATAGAGGAACACCTCACAGTTGAGCCCTGCAATGAGTATGTTCAGAG
CTGCGACATCGTTGCCTTCAATAAAATTTAAGAATCCTCTCACTGTTTTG
CCTTATAGTGCAGCCATTTTTGGCTGCAATTTAGTTTTTGTCGTTTTAAT
TGTGTTCTGGTTTTTAATGGTTTTGCTTGGCCTGCATTTTCCGTTGCTAA
ATTG
back to top