EY717723

Overview
NameEY717723
Unique NameEY717723
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY717723_ssr236 microsatellite EY717723_ssr236:236..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY717723 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.755e-33
Identity = 86/156 (55.13%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  145 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPFVKG-SPGRLIGWVHTSDAELRIGR 585
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+PF +G S       + +SDAE   GR
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGR 175          
BLAST of EY717723 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.218e-19
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1
Query:  292 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPFVKG--SPGRLIGWVHTSDAELRIGR 585
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVP ++G  + GR  G +  ++AEL  GR
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGR-AGAIMNANAELWNGR 144          
BLAST of EY717723 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.509e-19
Identity = 70/169 (41.42%), Postives = 94/169 (55.62%), Query Frame = 1
Query:   88 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPFVKG--SPGRLIGWVHTSDAELRIGR 585
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVP ++G  + GR  G +  ++AEL  GR
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGR-AGAIMNANAELWNGR 149          
BLAST of EY717723 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.195e-19
Identity = 69/177 (38.98%), Postives = 95/177 (53.67%), Query Frame = 1
Query:   76 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPFVKG-SPGRLIGWVHTSDAELRIGR 585
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P  +G SP         SDAE+  GR
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGR 176          
BLAST of EY717723 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  265 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPFVKG-SPGRLIGWVHTSDAELRIGR 585
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+P ++G S       + ++DAEL  GR
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGR 208          
BLAST of EY717723 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.705e-13
Identity = 51/108 (47.22%), Postives = 60/108 (55.56%), Query Frame = 1
Query:  268 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPFVKGSPGRLIGWVHTSDAELRIGR 585
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P      G  +G   T DAE+  GR
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAFARRKGDAMG-PFTPDAEMTNGR 151          
The following BLAST results are available for this feature:
BLAST of EY717723 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA8.755e-3355.13Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI6_HORVU4.218e-1952.48Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU5.509e-1941.42Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL7.195e-1938.98Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU4.365e-1646.36High molecular mass early light-inducible protein ... [more]
CBR_DUNBA7.705e-1347.22Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-082-G04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY717723 ID=EY717723; Name=EY717723; organism=Citrus sinensis; type=EST; length=881bp
CCACGCGTCCGGCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTT
CTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAAT
CTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCC
GGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAA
TGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGC
AGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAG
AAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTTGCGTTCAGCGGGCC
GGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTG
CATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCA
GACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGC
GTCCCTGGTTCCTTTTGTTAAAGGGTCACCGGGGAGACTAATCGGATGGG
TTCATACTTCCGATGCTGAATTGAGGATTGGAAGGTAGCTATGCTGGGCC
TTTGTGCTTGGGTTTCCACGACGTTGGTAAGGTGGGAACATTGGTCAAGT
GAATCTCGGGAGAGCGGGAGACGGGGTTTGTGTAGGGGGTGGGGGGTGGG
AGCAGTGTGGAACTACGTCCGACGGCCCCGGGGAGAGGTAGTTCCCCGGC
CCTTTGCTTGACAGAAGAAAGAGCAAGAGGGAGCAAGTGGGGGGAGGGAG
ATGACGATTTATAGTATGGGAGGATATCTTAAAAGAAATTTGAGTACAAA
GTAGGGGAAATGGGTCGCGGTCTGTAAAGAT
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