EY717722

Overview
NameEY717722
Unique NameEY717722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 8.826e-62
Identity = 115/155 (74.19%), Postives = 132/155 (85.16%), Query Frame = 2
Query:  122 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIW  K
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGK 167          

HSP 2 Score: 30.4166 bits (67), Expect = 8.826e-62
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  161 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 221          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 8.832e-62
Identity = 115/155 (74.19%), Postives = 132/155 (85.16%), Query Frame = 2
Query:  122 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+SLPNIK+PLILGIW  K
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGK 167          

HSP 2 Score: 30.4166 bits (67), Expect = 8.832e-62
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  161 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 221          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.311e-60
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 2
Query:  122 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR YN DN +DG YIAPAFMDKLVVHITKNFM+LPN+KVPLILGIW  K
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGK 167          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 4.726e-60
Identity = 114/156 (73.08%), Postives = 129/156 (82.69%), Query Frame = 2
Query:  125 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR   LDN  DG YIAPAF+DKLVVHITKNFM+LPNIKVPLILGIW  K
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGK 169          

HSP 2 Score: 31.187 bits (69), Expect = 4.726e-60
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  163 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGK 223          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 6.161e-60
Identity = 112/156 (71.79%), Postives = 127/156 (81.41%), Query Frame = 2
Query:  125 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR YN DN  DG YIAPAF+DKLVVHI KNFM+LPNIKVPLILG+W  K
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGK 171          

HSP 2 Score: 30.0314 bits (66), Expect = 6.161e-60
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  165 LGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGK 225          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 3.295e-58
Identity = 110/157 (70.06%), Postives = 123/157 (78.34%), Query Frame = 2
Query:  122 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF+ LPNIKVPLILGIW  K
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGK 171          

HSP 2 Score: 30.4166 bits (67), Expect = 3.295e-58
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIE 717
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA E
Sbjct:  165 LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAE 219          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 3.586e-57
Identity = 107/161 (66.46%), Postives = 123/161 (76.40%), Query Frame = 2
Query:  110 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR YN+DNT+DG YIAP+FMDKLVVHITKNF+ LPNIKVPLILG+W  K
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGK 171          

HSP 2 Score: 30.4166 bits (67), Expect = 3.586e-57
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIE 717
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA E
Sbjct:  165 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAE 219          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.126e-55
Identity = 105/159 (66.04%), Postives = 127/159 (79.87%), Query Frame = 2
Query:  110 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+TY LDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILG+W  K
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGK 166          

HSP 2 Score: 30.4166 bits (67), Expect = 1.126e-55
Identity = 22/55 (40.00%), Postives = 28/55 (50.91%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIE 717
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA E
Sbjct:  160 LGVWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAE 214          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 2.166e-55
Identity = 113/168 (67.26%), Postives = 130/168 (77.38%), Query Frame = 2
Query:  107 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y+SQGLR YNLDN +DG YIAPAFMDKLVVHITKNF++LPNIKVPLILGIW  K
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGK 167          
BLAST of EY717722 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 2.498e-55
Identity = 102/160 (63.75%), Postives = 122/160 (76.25%), Query Frame = 2
Query:  101 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWEAK 580
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR Y+ DN +DG YIAPAFMDKL VHI KNF++LPNIKVPLILG+W  K
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGK 164          

HSP 2 Score: 30.4166 bits (67), Expect = 2.498e-55
Identity = 22/61 (36.07%), Postives = 30/61 (49.18%), Query Frame = 1
Query:  559 LGNLGSKGQGNHSNVTW-FPQDGLNPIMMNAENWKVDMLENP-YIHQARYREAIEFTGRKK 735
            LG  G KGQG        F + G+NPIMM+A   +      P  + + RYREA +   + K
Sbjct:  158 LGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 218          
The following BLAST results are available for this feature:
BLAST of EY717722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA1_LARTR8.826e-6274.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR8.832e-6274.19Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.311e-6073.20Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.726e-6073.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU6.161e-6071.79Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.295e-5870.06Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.586e-5766.46Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN1.126e-5566.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.166e-5567.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA2.498e-5563.75Ribulose bisphosphate carboxylase/oxygenase activa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-082-G03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY717722 ID=EY717722; Name=EY717722; organism=Citrus sinensis; type=EST; length=886bp
CCACGCGTCCGCACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGCA
TTACAGCGTGACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCT
AGCCTAATGGCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGC
AACCTCTGTCCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAA
GCTCAAGGATCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACT
GCTGAAGTCGATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCT
TGCCTACGACGAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTG
CTGTGGACTCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCT
GTCATGAGTTCTTATGACTACATCAGCCAAGGTCTCCGCACATACAACTT
GGACAACACGATCGACGGTCTCTACATTGCCCCTGCTTTCATGGACAAGC
TTGTTGTTCACATCACCAAGAACTTCATGTCCCTGCCCAACATCAAGGTT
CCTCTCATCTTGGGAATTTGGGAAGCAAAGGACAAGGAAATCATTCCAAT
GTGACCTGGTTTCCCCAAGATGGCCTCAACCCAATTATGATGAATGCCGA
AAATTGGAAAGTGGACATGCTTGAAAACCCTTATATTCATCAGGCCAGGT
ACCGTGAAGCAATTGAATTTACAGGAAGGAAAAAAGGGCCCCCTCCTGAT
CATGAATTTTATCCCGGACTCGGCCAATTGGATGCAACAACCAAAAAAAC
TAAAACACCAAATGGTAAAACCTCGCTCTAACATTGTTAGTAACCCATTT
TATGCCAATCCCTATTTTTCAAAGAGAAGGAAACCA
back to top