CX043277

Overview
NameCX043277
Unique NameCX043277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043277_ssr33 microsatellite CX043277_ssr33:33..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig3563 contig Csv1_Contig3563:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.827e-47
Identity = 91/152 (59.87%), Postives = 112/152 (73.68%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG+FGGK+VPETL+  LS LE+ F  +  D  FQ EL+  L+DYVGRE+PLYFAERLT+HYR E GEGP IYLKREDLNH GAHKINNA+ QA++AKR+G+K I+A TGAGQHGV              ++MG  DME+Q+  V  M+LL
Sbjct:   79 GRFGKFGGKYVPETLMHALSELESAFYALATDDDFQRELAGILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLECIIYMGAQDMERQALNVFRMRLL 230          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.827e-47
Identity = 91/152 (59.87%), Postives = 111/152 (73.03%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG+FGGK+VPETL+  LS LE  F  +  D  FQ EL+  L+DYVGRE+PLYFAERLT+HYR E GEGP IYLKREDLNH GAHKINNA+ QA++AKR+G+K I+A TGAGQHGV              ++MG  DME+Q+  V  M+LL
Sbjct:   84 GRFGKFGGKYVPETLMHALSELETAFYSLATDEDFQRELAEILKDYVGRESPLYFAERLTEHYRRENGEGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMRLL 235          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.445e-46
Identity = 89/152 (58.55%), Postives = 111/152 (73.03%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG+FGGK+VPETL+  L+ LE+ F  +  D  FQ+EL   L+DYVGRE+PLYFAERLT HY+   GEGPEIYLKREDLNH GAHKINNA+ QA++AKR+G+K I+A TGAGQHGV              ++MG  DME+Q+  V  M+LL
Sbjct:   75 GRFGKFGGKYVPETLMYALTELESAFRSLSGDQVFQKELDGILKDYVGRESPLYFAERLTLHYKRPNGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGKKRIIAETGAGQHGVATATVCARFGLQCVIYMGAQDMERQALNVFRMRLL 226          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.002e-45
Identity = 87/152 (57.24%), Postives = 112/152 (73.68%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGGK+VPETL+  L+ LE+ F+ +  D +FQ+EL   L+DYVGRE+PLYFAERLT+HY+   G GP IYLKREDLNH GAHKINNA+ QA++AKR+G++ I+A TGAGQHGV              ++MG  DME+Q+  V  M+LL
Sbjct:   52 GRFGRFGGKYVPETLMHALTELESAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHTGAHKINNAVAQALLAKRLGKQRIIAETGAGQHGVATATVCRRFGLQCIIYMGAQDMERQALNVFRMRLL 203          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 7.183e-44
Identity = 89/152 (58.55%), Postives = 109/152 (71.71%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGGK+VPETL+  LS LEA F    QD  FQ EL   LRDYVGR +PLYFAERL+ HY +++ + P+IYLKREDLNH GAHKINNA+GQ ++AKRMG++ I+A TGAGQHGV              ++MG  DME+Q   VL M+LL
Sbjct:   19 GRFGRFGGKYVPETLMPALSELEAAFAHYRQDPDFQAELQQLLRDYVGRPSPLYFAERLSAHYAHDQVQ-PQIYLKREDLNHTGAHKINNALGQVLLAKRMGKQRIIAETGAGQHGVATATVCARFGLQCVIYMGVQDMERQRLNVLRMRLL 169          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 9.382e-44
Identity = 86/149 (57.72%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  349 GRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            GRFGGK+VPETL+  L+ LE  F+ +  D +FQ+EL   L+DYVGRE+PLYFAERLT+HY+   G GP IYLKREDLNH GAHKINNA+ QA++AKR+G++ I+A TGAGQHGV              ++MG  DME+Q+  V  MKLL
Sbjct:    1 GRFGGKYVPETLMHALTELENAFHALATDDEFQKELDGILKDYVGRESPLYFAERLTEHYKRADGTGPLIYLKREDLNHRGAHKINNAVAQALLAKRLGKQRIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRMKLL 149          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.600e-43
Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGGK+VPETL+  L+ LE  +     D  FQ EL   LRDYVGR TPLYFAERLT HY    G G +IYLKREDLNH GAHKINNA+GQ ++AKRMG++ I+A TGAGQHGV              ++MG  DME+Q+  V  M+L+
Sbjct:   21 GRFGRFGGKYVPETLMPALAELETAYQKYRHDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQVLLAKRMGKQRIIAETGAGQHGVATATVCARFGLECVIYMGVHDMERQALNVFRMRLM 172          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.600e-43
Identity = 86/152 (56.58%), Postives = 104/152 (68.42%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FGRFGGK+VPETL+  L+ LE  +     D  FQ EL   LRDYVGR TPLYFAERLT HY    G G +IYLKREDLNH GAHKINNA+GQ ++AKRMG++ I+A TGAGQHGV              ++MG  DME+Q+  V  M+L+
Sbjct:   21 GRFGRFGGKYVPETLMPALAELETAYQQYRNDPGFQAELQQLLRDYVGRATPLYFAERLTAHYARPDGTGAQIYLKREDLNHTGAHKINNALGQVLLAKRMGKQRIIAETGAGQHGVATATVCARFGLECVIYMGVHDMERQALNVFRMRLM 172          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.730e-43
Identity = 85/152 (55.92%), Postives = 106/152 (69.74%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG+FGGK+VPETL+  L  LE       QD  F++EL   LRDYVGR +PLYFAERLT HY    G GP+IYLKREDLNH GAHKINNA+GQA++A+RMG++ I+A TGAGQHGV              ++MG  DME+Q+  V  M+L+
Sbjct:   18 GRFGKFGGKYVPETLMPALLQLETACKKYSQDPTFKQELQQLLRDYVGRPSPLYFAERLTAHYTKPDGTGPQIYLKREDLNHTGAHKINNALGQALLAQRMGKQRIIAETGAGQHGVATATVCARFGLKCVIYMGIHDMERQALNVFRMRLM 169          
BLAST of CX043277 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.956e-41
Identity = 83/152 (54.61%), Postives = 103/152 (67.76%), Query Frame = 1
Query:  340 GKFGRFGGKFVPETLITCLSLLEAEFNFVLQDTKFQEELSTALRDYVGRETPLYFAERLTDHYRNEKGEGPEIYLKREDLNHVGAHKINNAIGQAMIAKRMGRKSIVAATGAGQHGVXXXXXXXXXXXXXXVFMGTADMEKQSSKVLLMKLL 795
            G+FG +GGK+VPETL+  L+ LE  +     ++ FQEEL+  L+DYVGR +PLYFAERL+ HY    G  P IYLKREDLNH GAHKINNA+GQ ++AKRMG+K I+A TGAGQHGV              ++MG  DME+Q   V  M LL
Sbjct:   19 GRFGNYGGKYVPETLMPALTELEEAYYRYRAESSFQEELAGLLKDYVGRSSPLYFAERLSAHYARPDGTYPLIYLKREDLNHTGAHKINNALGQVLLAKRMGKKRIIAETGAGQHGVATATVCARFGLECIIYMGVQDMERQKLNVFRMNLL 170          
The following BLAST results are available for this feature:
BLAST of CX043277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 425
Match NameE-valueIdentityDescription
TRPB1_ARATH1.827e-4759.87Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRBP2_ARATH1.827e-4759.87Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB_CAMAC3.445e-4658.55Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB2_MAIZE1.002e-4557.24Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB_THEEB7.183e-4458.55Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB1_MAIZE9.382e-4457.72Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB_ANAVT1.600e-4356.58Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB2_ANASP1.600e-4356.58Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_TRIEI2.730e-4355.92Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB_SYNY31.956e-4154.61Tryptophan synthase beta chain OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043277 ID=CX043277; Name=CX043277; organism=Citrus sinensis; type=EST; length=796bp
AAACAGGATAACATTTTTATGTATATGTATAGGTGTGTGTGTGTTTAAAG
ATATCACAAGCCAAAATCGTCTCTTAATCGCCACACATACTGCATACAGA
GAAGTGTTTTTGCGCCCACTAACATGGATATTGTTTGCAATAACATAAGT
TTTCAGCTTCCTCACAAATTATCTATTACACGAACGCCATTCACATTCAC
AACAACAAAGAGTCGTACGGGGCCGTACTGCTCTTTACAAAAGTACTCGA
CCTCGAGTCCCATTATGAGAAAGCCTTTGATAAACAGCTTATTACCTAAA
ACTGATCATGATCATCGTGAGTACTGGAAACTCAATCCAGGAAAATTTGG
GAGATTTGGAGGAAAGTTTGTGCCTGAGACACTAATCACTTGTTTGAGCC
TACTTGAAGCTGAATTCAACTTTGTTTTGCAGGATACTAAGTTTCAGGAG
GAGCTGTCGACTGCATTAAGAGACTATGTAGGACGGGAGACGCCTCTTTA
TTTTGCTGAGAGGCTGACAGATCATTACAGGAACGAAAAGGGAGAAGGGC
CAGAGATTTATCTGAAAAGAGAAGATCTCAACCATGTGGGTGCACACAAG
ATCAACAACGCCATAGGACAGGCAATGATAGCCAAGCGCATGGGCCGGAA
AAGTATTGTCGCGGCCACCGGTGCTGGACAGCATGGCGTCGCTACAGCTG
CTGCATGCGCAAAACTGGCTTTGGACTGTACTGTGTTCATGGGCACCGCT
GATATGGAGAAACAATCCTCTAAAGTGCTCCTAATGAAGCTACTAG
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