EY717714

Overview
NameEY717714
Unique NameEY717714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP1B_DICDI (AP-1 complex subunit beta OS=Dictyostelium discoideum GN=ap1b1 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.826e-36
Identity = 79/128 (61.72%), Postives = 101/128 (78.91%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASR------TDDEDYPN 390
            QVQLQLLT+ VKLFLK+P +  QQM+Q VLN +T E+DNPDLRDR ++YWRLLSTD EAAK VVL+EKP+I+D ++ LD SLL+EL+ NI+TL+SVYHKPPE FVT++K    R       +DE+ P+
Sbjct:  477 QVQLQLLTSIVKLFLKRPKDA-QQMVQTVLNLSTQESDNPDLRDRGFVYWRLLSTDFEAAKAVVLSEKPLITDTTSHLDESLLNELILNISTLASVYHKPPETFVTKLKGLNKRGLRNKEEEDEEEPD 603          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP1B1_MOUSE (AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.690e-36
Identity = 84/151 (55.63%), Postives = 106/151 (70.20%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV------------TRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEG 441
            QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP AFV             R  ++ S    E  P G+  G  D P  +  +G
Sbjct:  479 QVQLQLLTAIVKLFLKKPTE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPNAFVEGGRGVVHKSLPPRTASSESTESPETAPAGAPAG--DQPDVIPAQG 626          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP1B1_HUMAN (AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.820e-36
Identity = 81/139 (58.27%), Postives = 101/139 (72.66%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV------------TRVKTTASRTDDEDYPNGSEQG 405
            QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP AFV             R  ++ S    E  P G+  G
Sbjct:  479 QVQLQLLTAIVKLFLKKPTE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPSAFVEGGRGVVHKSLPPRTASSESAESPETAPTGAPPG 616          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP1B1_RAT (AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.221e-36
Identity = 75/105 (71.43%), Postives = 92/105 (87.62%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV 339
            QVQLQLLTA VKLFLKKPTE  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP AAK+VVLAEKP+IS++++ ++P+LLDEL+  I TL+SVYHKPP AFV
Sbjct:  479 QVQLQLLTAIVKLFLKKPTE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVAAKEVVLAEKPLISEETDLIEPTLLDELICYIGTLASVYHKPPNAFV 582          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP2B1_RAT (AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.511e-34
Identity = 86/180 (47.78%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXXXXXXXXDLLGDLIGLD 564
            QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP AFV        R     +   ++ G S   T  A     PQ   S                       DLLGDL+ LD
Sbjct:  479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV-EGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQPQVIPSQ---------------------GDLLGDLLNLD 635          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP2B1_HUMAN (AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.511e-34
Identity = 86/180 (47.78%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXXXXXXXXDLLGDLIGLD 564
            QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP AFV        R     +   ++ G S   T  A     PQ   S                       DLLGDL+ LD
Sbjct:  479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV-EGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQPQVIPSQ---------------------GDLLGDLLNLD 635          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP2B1_BOVIN (AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 4.511e-34
Identity = 86/180 (47.78%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXXXXXXXXDLLGDLIGLD 564
            QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP AFV        R     +   ++ G S   T  A     PQ   S                       DLLGDL+ LD
Sbjct:  479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV-EGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQPQVIPSQ---------------------GDLLGDLLNLD 635          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP1B1_BOVIN (AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.511e-34
Identity = 86/180 (47.78%), Postives = 111/180 (61.67%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFVTRVKTTASRTDDEDYPNGSEQGYSDAPTHVADEGASPQTSSSNXXXXXXXXXXXXXXXXXXXXXXDLLGDLIGLD 564
            QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP AFV        R     +   ++ G S   T  A     PQ   S                       DLLGDL+ LD
Sbjct:  479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV-EGSHGIHRKHLPIHHGSTDAGDSPVGTTTATNLEQPQVIPSQ---------------------GDLLGDLLNLD 635          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP2B1_MOUSE (AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.005e-33
Identity = 70/105 (66.67%), Postives = 91/105 (86.67%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV 339
            QVQL LLTA VKLFLKKP+E  Q+++Q VL+ AT ++DNPDLRDR YIYWRLLSTDP  AK+VVL+EKP+IS++++ ++P+LLDEL+ +I +L+SVYHKPP AFV
Sbjct:  479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLLSTDPVTAKEVVLSEKPLISEETDLIEPTLLDELICHIGSLASVYHKPPNAFV 582          
BLAST of EY717714 vs. ExPASy Swiss-Prot
Match: AP2B_SCHPO (AP-2 complex subunit beta OS=Schizosaccharomyces pombe GN=apl1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.961e-22
Identity = 53/105 (50.48%), Postives = 71/105 (67.62%), Query Frame = 1
Query:   25 QVQLQLLTATVKLFLKKPTEGPQQMIQVVLNNATVETDNPDLRDRAYIYWRLLSTDPEAAKDVVLAEKPVISDDSNQLDPSLLDELLANIATLSSVYHKPPEAFV 339
            ++QL LLTA +K+FLKKPT     M+  VL   T E ++PDLRDR  IY R+LS +PE AK V+LA  P ++  +   DP   ++L+ NI+TLSS+YHKPP  FV
Sbjct:  479 EIQLTLLTAVIKVFLKKPTAAAD-MVTNVLQWCTDEVNDPDLRDRGIIYSRMLSANPELAKKVILANMPPVNVGTGMYDPDTTEQLMLNISTLSSIYHKPPNRFV 582          
The following BLAST results are available for this feature:
BLAST of EY717714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AP1B_DICDI2.826e-3661.72AP-1 complex subunit beta OS=Dictyostelium discoid... [more]
AP1B1_MOUSE3.690e-3655.63AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1... [more]
AP1B1_HUMAN4.820e-3658.27AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1... [more]
AP1B1_RAT8.221e-3671.43AP-1 complex subunit beta-1 OS=Rattus norvegicus G... [more]
AP2B1_RAT4.511e-3447.78AP-2 complex subunit beta OS=Rattus norvegicus GN=... [more]
AP2B1_HUMAN4.511e-3447.78AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1... [more]
AP2B1_BOVIN4.511e-3447.78AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 P... [more]
AP1B1_BOVIN4.511e-3447.78AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1... [more]
AP2B1_MOUSE1.005e-3366.67AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1... [more]
AP2B_SCHPO3.961e-2250.48AP-2 complex subunit beta OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-082-F06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY717714 ID=EY717714; Name=EY717714; organism=Citrus sinensis; type=EST; length=864bp
CCACGCGTCCGCGGACGCGTGGGACAAGTCCAGTTGCAATTACTAACGGC
AACTGTCAAACTTTTTCTTAAGAAGCCTACTGAAGGTCCACAACAGATGA
TTCAGGTTGTTTTAAACAATGCTACCGTCGAGACAGACAATCCCGATCTG
CGGGATCGTGCTTACATATATTGGCGTCTTCTATCAACTGATCCTGAGGC
AGCTAAGGATGTTGTGCTAGCTGAGAAGCCTGTGATCAGCGACGATTCAA
ACCAACTTGATCCTTCTCTTCTTGATGAGCTTCTTGCAAACATTGCTACA
TTGTCCTCTGTGTACCACAAACCGCCAGAAGCTTTTGTAACACGTGTGAA
GACCACTGCCTCAAGAACTGACGATGAGGACTATCCTAACGGGAGTGAAC
AGGGTTATTCTGATGCACCTACTCATGTTGCTGATGAGGGAGCATCACCT
CAAACTAGTTCAAGTAATGCCCCATATGCTGCAACAAGACAGCCAGCACC
TCCTCCAGCTGCTCCTGTGTCTCCTCCAGTGCCTGATTTACTTGGTGATC
TGATAGGCTTAGATAATAGTGCTGCCATCGTCCCTGCTGACCAGGCTGCA
GCTTCTCCTGTCCCTGCTTTACCTGTTGTGCTACCGGCATCAACTGGACA
GGGTCTGCAAATCGGTGCAGAGTTAACAAGACAGGATGGTCAAGTATTTT
ACAGCATGCTGTTTGAGACAATACACAGACTCCACTTGATGGGTTCATGA
TTCAGTTTAACAGAACACATTGGTCTTGCAGCTGGTGGACCCCTTCNGTG
CCACAATGCAACGGGGACTTCGGCGAGAACTGGTTGCAATGTATTGTTCA
AAATATGCTGCTGG
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