CX043391

Overview
NameCX043391
Unique NameCX043391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:102..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX043391 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 58/146 (39.73%), Postives = 77/146 (52.74%), Query Frame = -2 
Query:  245 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTGCVLCLETEDXXXXXXXXXXXXXXXXXXXXXXXXACCGERVGKVKDPYGFTWL 676
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G    L T+D                           G + GKV DP+G TW+
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSGVTFLLGTKDAEAAVAKAVDAGAVKVEVTEAEVE--LGFK-GKVTDPFGVTWI 151
The following BLAST results are available for this feature:
BLAST of CX043391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH1.552e-1639.73Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS07_10G05_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10G05-N10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043391 ID=CX043391; Name=CX043391; organism=Citrus sinensis; type=EST; length=761bp
CAAGAAGTCTATAACTGCCAGCTGTCAGTTCCTTCAAAATTAATCAAAAA
CATCCATCATCACGATCAACGTTCAGCAATATCATCAAGATATCCGAAAT
ACTAAAAGAGCCTAGAGCTATAAACCCACAGCAGTAAAGACGAACGACAA
AAGAGAGTTATGTGATAGTAGATCAATATCTAAAGATCAGATCCGGCGGC
TCTTAAGCTTCCACGCCAGCGCACTTCTTGACCGGGGAGCAAATGAGCCA
AGTGAAGCCATAAGGATCTTTGACCTTTCCCACGCGCTCTCCACAACACG
CGCCGTTGCCTTCAGCGAGCTCACCCTCAGCAACAGCTCCAGCACTCACA
GCCTTGGCGACGGCAGCCTCCACGTCCTCGGTCTCCAAGCAAAGCACGCA
TCCGGTCCCCACGGTCTGTGCAGCAGCAGAGTCACCGGAAACGTCAGAGA
CAAGGAAAGTGGAGCCGGCAATCTCGAGTTGAGCGCAGGAGATGAGTGGG
AGCTCCTGTTCAGCCTTGCGTTTGGTTTCCACGCTACGGCCGATCTCCAC
GGCACCAAACGCGGTCTTGTAGAACTGAACAGCGTCAGTAGCCTTCGGTG
CTTCCACAAGCAACTGCGGCTTCATCCCCGTGAAGCTGGCCACGGTAGCA
GGAGCCTTCTCCGGCGCAGCTCCATTCTGAACCTCCTGGACATCAGCCAT
TGAGCGAGAGAGTTTTGGAGTCTAGAGACAAAGGAAAGAAACCTGACCCT
AGGAGAGAGAA
back to top