EY665449

Overview
NameEY665449
Unique NameEY665449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665449_ssr160 microsatellite EY665449_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 4.340e-66
Identity = 142/240 (59.17%), Postives = 170/240 (70.83%), Query Frame = 1
Query:    1 ASATLSVSKSALQGNGKGFSQFSGLRNSAS-LPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAK-LKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            ASAT SV+K A++ NGKGFS+FSGLRNS+  LPF RKSSDDFHS++  QT+A+GSS    + +  +AK LKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVI+VVS+RNP NLPW  LG             + G G+  +   ++    +P +     P    G NA+ +T   + II NAS       P   +VLDQK
Sbjct:    2 ASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAKKVLITAPGK--GDIPTYVVGVNADAYT-HADDIISNASCTTNCLAPF-VKVLDQK 237          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.491e-63
Identity = 134/229 (58.52%), Postives = 161/229 (70.31%), Query Frame = 1
Query:   28 SALQGNGKGFSQFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            S+LQ + KGFS+FSGLR S+++PFGRK++DD  SV+A QTS +G  +S  ++   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVGTDGISVDGKVIQVVS+RNPVNLPWG LG             + G G+      ++    +P +     P    G NA+ +     PII NAS       P   +VLDQK
Sbjct:    2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK--GDIPTYVVGVNADLYNPD-EPIISNASCTTNCLAPF-VKVLDQK 224          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 5.681e-58
Identity = 136/240 (56.67%), Postives = 160/240 (66.67%), Query Frame = 1
Query:    1 ASATLSVSKSALQGNGKGFSQFSGLRNS-ASLPFGRK-SSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            AS T SV K        GF++FSGLR+S ASLPFG+K SSD+F S+++ QTSA+GSS  GYRK   +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+++AINDTGGVKQASHLLKYDSTLGIF+ADVKP G   ISVDGK+IQVVSNRNP  LPW  LG             + G G+      ++    +P +     P    G NA+ + S   PII NAS       P   +VLDQK
Sbjct:    2 ASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAKKVIITAPGK--GDIPTYVVGVNADAY-SHDEPIISNASCTTNCLAPF-VKVLDQK 228          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.710e-54
Identity = 131/240 (54.58%), Postives = 158/240 (65.83%), Query Frame = 1
Query:    1 ASATLSVSKSALQGNGKGFSQFSGLRNSASLPFGRKS-SDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKD-SPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            AS+ LS +   LQ  G G S+FSGLR+SASLP  R + SDDF S ++ +T A+G+S  G R+   +AKLKVAINGFGRIGRNFLRCWHGR D SPL+V+AINDTGGVKQASHLLKYDSTLGIF+ADVKPVG + ISVDGKVI+VVS+RNP NLPWG LG             + G G+      ++    +P +     P    G NA+ +     PII NAS       P   +VLDQK
Sbjct:    2 ASSMLSATTVPLQQGG-GLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-GPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK--GDIPTYVVGVNADQYNPD-EPIISNASCTTNCLAPF-VKVLDQK 235          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.234e-54
Identity = 127/238 (53.36%), Postives = 152/238 (63.87%), Query Frame = 1
Query:    1 ASATLSVSKSALQGNGKGFSQFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQK 714
            AS  LS++  +L+   KGFS+FSGL  S SLPFGRK SDD  + ++ QT+A+G   S    V  +AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV INDTGGVKQASHLLKYDS LG F+ADVK  G   ISVDGKVI+VVS+RNPVNLPWG +G             + G G+      ++    +P +     P    G N E +T   + II NAS       P   +VLDQK
Sbjct:    2 ASNMLSIANPSLRVYNKGFSEFSGLHTS-SLPFGRKGSDDLMAFVSFQTNAVGGKRSSQNGVV-EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK--GDIPTYVVGVNEEGYT-HADTIISNASCTTNCLAPF-VKVLDQK 233          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 2.662e-52
Identity = 74/113 (65.49%), Postives = 88/113 (77.88%), Query Frame = 1
Query:  145 TSALGSSSSGYRKVAAQA--------KLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            T +  SS SG R  AA+A        K++VAINGFGRIGRNFLRCWHGR+++ L+VVAIND+GGVKQASHLLKYDSTLG F ADVK V    ISVDGK I++VS+R+P+ LPW
Sbjct:   11 TGSAVSSKSGVRAKAARAVVDVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPW 123          

HSP 2 Score: 83.5741 bits (205), Expect = 2.662e-52
Identity = 56/110 (50.91%), Postives = 68/110 (61.82%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            P  ++ IDLVIEGTGVF+++ GAGKHIQAGA KVLITAP K     PT V G      +    P       TTNCLAPF++    + FGI++G     H SYT G+QRLL
Sbjct:  122 PWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVLITAPAKD-KDIPTFVVGVNEGDYKHE-YPIISNASCTTNCLAPFVK-VLEQKFGIVKGTMTTTH-SYT-GDQRLL 226          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.615e-49
Identity = 79/154 (51.30%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   22 SKSALQGNGKGFSQFSGLR---NSASLPFGRKSS-----DDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            SKSA+      F+QFSGL+   N+A L    + S      D +       + +G+ +      A   K++VAINGFGRIGRNF+RCW GR DS ++VV INDT GVK ASHLLKYDS LG F++DV   G D I+VDGK I+VVSNRNP+ LPW
Sbjct:   15 SKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAFGGVSDANDAFFNAVNTMGAPARTSN--APSMKVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILGTFDSDV-VAGEDSITVDGKTIKVVSNRNPLELPW 165          

HSP 2 Score: 77.411 bits (189), Expect = 2.615e-49
Identity = 53/110 (48.18%), Postives = 66/110 (60.00%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            P  ++ ID+V+E TGVFV+  GAGKHIQAGAKKVLITAP KG      VVG         +    S     TTNC+APF++      FG+++G     H SYT G+QRLL
Sbjct:  164 PWKEMEIDIVVEATGVFVDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASC-TTNCMAPFMK-VLDDEFGVVRGMMTTTH-SYT-GDQRLL 269          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.241e-41
Identity = 102/220 (46.36%), Postives = 133/220 (60.45%), Query Frame = 1
Query:   58 SQFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQKL 717
            + FSGLR+S S+ F R++S  FH VIA Q +   + ++  R     AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK A+HLLKYDS LG F+ADVK +  +  S+DGK I+VVSNR+P+ LPW  LG               G G+ H     +    + P + +  P    G N + +   +  II NAS       P   +VLD++L
Sbjct:   40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIIDNETFSIDGKPIKVVSNRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGSDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPF-VKVLDEEL 254          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 8.497e-41
Identity = 53/85 (62.35%), Postives = 65/85 (76.47%), Query Frame = 1
Query:  205 KVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPW 459
            +VAINGFGRIGRNFLRCW GR DS LEVV INDT   +  +HLL+YDS LG  +AD+     + I+V+GK I+ VS+RNP+NLPW
Sbjct:    3 RVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTSDPRTNAHLLRYDSMLGKLDADIS-ADENSITVNGKTIKCVSDRNPLNLPW 86          

HSP 2 Score: 78.9518 bits (193), Expect = 8.497e-41
Identity = 55/110 (50.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:  455 PGGDLGIDLVIEGTGVFVEREGAGKHIQAGAKKVLITAPRKG*HPNPTVVGGPMRNALQAR*TPSSEMLLGTTNCLAPFLQGSWTKSFGIIQGNPDHPHPSYTWGNQRLL 784
            P  +  +DLVIE TGVFV  EGA KH+QAGAKKVLITAP KG +    VVG              S     TTNCLAPF +     +FGII+G     H SYT G+QR+L
Sbjct:   85 PWAEWNVDLVIEATGVFVTHEGATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHEEYEVISNASC-TTNCLAPFGK-VINDNFGIIKGTMTTTH-SYT-GDQRIL 190          
BLAST of EY665449 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.190e-39
Identity = 100/220 (45.45%), Postives = 132/220 (60.00%), Query Frame = 1
Query:   58 SQFSGLRNSASLPFGRKSSDDFHSVIALQTSALGSSSSGYRKVAAQAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVVAINDTGGVKQASHLLKYDSTLGIFEADVKPVGTDGISVDGKVIQVVSNRNPVNLPWGGLGHRPCD*RDRSVCRKRGCGQAHSGWCQESTYYSPPERVTSQPYRCWGSNAECFTSQMNPIIRNASWHNQLPCPLSSRVLDQKL 717
            ++F+GLR+S  + F  K S  F  V++ Q +   + S+   K    AKLKVAINGFGRIGRNFLRCWHGRKDSPL+VV +ND+GGVK ASHLLKYDS LG F+ADVK V  + ISVDGK I+VVS+R+P+ LPW  LG               G G+ H     +    + P +    P    G N + ++ ++  II NAS       P   +V+D++L
Sbjct:    9 AEFAGLRSSGCVTFSNKESS-FFDVVSAQLTPKTTRSTPV-KGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDNETISVDGKHIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGK-HIQAGAKKVIITAPAKGADIPTYVVGVNEQDYSHEVADIISNASCTTNCLAPF-VKVMDEEL 224          
The following BLAST results are available for this feature:
BLAST of EY665449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
G3PA_PEA4.340e-6659.17Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC4.491e-6358.52Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH5.681e-5856.67Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE1.710e-5454.58Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL2.234e-5453.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE2.662e-5265.49Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_GRAVE2.615e-4951.30Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PB_SPIOL8.241e-4146.36Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P2_SYNY38.497e-4162.35Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3PB_TOBAC1.190e-3945.45Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-C01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665449 ID=EY665449; Name=EY665449; organism=Citrus sinensis; type=EST; length=850bp
GCTTCGGCCACTCTCTCTGTATCCAAATCAGCTCTTCAGGGAAATGGTAA
GGGATTCTCACAATTCTCAGGTCTACGCAACTCTGCAAGCCTTCCTTTTG
GCAGGAAATCTTCTGATGACTTCCATTCAGTCATTGCTCTCCAGACCTCT
GCTTTAGGAAGCAGCAGCAGCGGGTACAGGAAGGTTGCTGCTCAGGCAAA
GCTGAAGGTTGCAATCAATGGGTTTGGTAGAATTGGTAGGAACTTCTTGA
GGTGCTGGCACGGCCGCAAGGACTCTCCACTTGAAGTCGTTGCCATCAAT
GACACCGGAGGTGTCAAGCAGGCCTCTCACCTCCTCAAGTACGACTCCAC
CCTTGGCATCTTTGAAGCCGATGTTAAACCAGTTGGTACTGATGGCATCT
CTGTTGATGGCAAGGTCATCCAGGTTGTTTCTAACCGCAACCCCGTCAAT
CTCCCCTGGGGGGGACTTGGGCATCGACCTTGTGATTGAAGGGACAGGAG
TGTTTGTAGAAAGAGAGGGTGCGGGCAAGCACATTCAGGCTGGTGCCAAG
AAAGTACTTATTACAGCCCCCCGGAAAGGGTGACATCCCAACCCTACCGT
TGTTGGGGGTCCAATGCGGAATGCTTTACAAGCCAGATGAACCCCATCAT
CAGAAATGCTTCTTGGCACAACCAACTGCCTTGCCCCCTTTCTTCAAGGG
TCTTGGACCAAAAGCTTTGGCATTATTCAGGGAAACCCTGACCACCCACA
CCCCTCCTACACTTGGGGGAACCAAAGGTTACTCCCAAGCTAACCCACCG
GGAACCTAGGGGGAAAAAAAAAAAGCTGCAATCCAAATGTGCCCCAAAAT
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