CX043687

Overview
NameCX043687
Unique NameCX043687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.858e-17
Identity = 42/53 (79.25%), Postives = 44/53 (83.02%), Query Frame = 1
Query:  403 ARGTHVR----MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            A G+H      MQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTY+TPE AA A
Sbjct:   79 ASGSHAPRQKGMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVA 131          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.939e-15
Identity = 48/104 (46.15%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  256 LHDGVNGGWISFDDQLG------RNNDIGSAIANIDTSMTSXXXXXXXXXXQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            L D +N GW  F+   G      R  +I  + A    +  +            ++ RG H    YRGVRRRPWGKFAAEIRDP KNGARVWLGTY+T E AA A
Sbjct:   57 LKDALNVGWSPFNFSAGEVKSEQREEEIVVSPAETTAAPAA------------ELPRGRH----YRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIA 144          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.013e-14
Identity = 62/186 (33.33%), Postives = 85/186 (45.70%), Query Frame = 1
Query:   46 SESDLALLESIRQQLLEDDFEIFT--TFPSETLPINNNETLN-----SPVXXXXXXXXTENINEYL---SQGVXXXXXXXLHDGVNGGWISFDDQLGRNN--------DIGSAIANIDTSMTSXXXXXXXXXXQMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            S+SD A LESIR+ LL +   I +  T  S T      +++      +P         TE+  +     +          L+D  +GGW         +         +   + A +D S+             +  A+G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA A
Sbjct:    7 SQSDYAFLESIRRHLLGESEPILSESTASSVTQSCVTGQSIKPVYGRNPSFSKLYPCFTESWGDLPLKENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVD-SVPVKKEKTSPVSAAVTAAKGKH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA 187          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  391 QMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            Q  V +G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGTY+T E AA A
Sbjct:   90 QAVVPKGRH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALA 138          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.849e-14
Identity = 38/53 (71.70%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  391 QMDVARGTHVRMQYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            Q  V +G H    YRGVR+RPWGKFAAEIRDP KNGARVWLGTY+T E AA A
Sbjct:   94 QAVVPKGRH----YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALA 142          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.495e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:  430 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            YRGVR+RPWGKFAAEIRDP KNGARVWLGT++T E AA A
Sbjct:  117 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALA 156          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.259e-13
Identity = 33/40 (82.50%), Postives = 36/40 (90.00%), Query Frame = 1
Query:  430 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            YRGVR+RPWGKFAAEIRDP KNGARVWLGTY++ E AA A
Sbjct:  107 YRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALA 146          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.112e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  427 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            ++RGVRRRPWGKFAAEIRDP +NGAR+WLGT++T E AA A
Sbjct:   19 RFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARA 59          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  427 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            +YRGVRRRPWGK+AAEIRD +K+G RVWLGT+DT E AA A
Sbjct:   19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARA 59          
BLAST of CX043687 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.027e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  427 QYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTPEGAAFA 549
            +YRGVRRRPWGK+AAEIRD +K+G RVWLGT+DT E AA A
Sbjct:   14 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARA 54          
The following BLAST results are available for this feature:
BLAST of CX043687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
ERF99_ARATH4.858e-1779.25Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_TOBAC5.939e-1546.15Ethylene-responsive transcription factor 1 OS=Nico... [more]
EF100_ARATH1.013e-1433.33Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF2_TOBAC3.849e-1471.70Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF2_NICSY3.849e-1471.70Ethylene-responsive transcription factor 2 OS=Nico... [more]
EF101_ARATH2.495e-1382.50Ethylene-responsive transcription factor 2 OS=Arab... [more]
ERF1_SOLLC3.259e-1382.50Ethylene-responsive transcription factor 1 OS=Sola... [more]
ERF98_ARATH2.112e-1275.61Ethylene-responsive transcription factor ERF098 OS... [more]
ERF97_ARATH6.146e-1275.61Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF96_ARATH8.027e-1275.61Ethylene-responsive transcription factor ERF096 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_12G10_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G10-M20-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043687 ID=CX043687; Name=CX043687; organism=Citrus sinensis; type=EST; length=551bp
TTGTAGTAAAACAAAAAGGGGAAAAAAATGAACAGAGAAAATATGTCCGA
GTCAGATTTGGCTCTCCTGGAGTCAATTCGCCAACAACTTCTGGAGGATG
ACTTTGAAATTTTCACGACGTTTCCTTCAGAAACATTACCAATCAACAAT
AATGAAACATTAAATTCCCCTGTTTCGAGCTTCAATAGTTTCTCCTTCAC
AGAGAATATCAATGAGTATCTATCACAAGGGGTTAGCTCTAGCTCGCACT
CCTCCTTACATGACGGCGTCAATGGAGGGTGGATTTCGTTTGATGATCAG
CTTGGTCGTAATAATGATATTGGAAGTGCAATAGCAAATATTGATACGAG
TATGACTTCTCCTCCTCATCCTCCTCCTCTTCCAACTCCACAGATGGATG
TGGCACGTGGGACTCACGTGAGGATGCAGTATAGAGGCGTGAGGAGGAGG
CCGTGGGGGAAGTTTGCTGCGGAGATAAGGGACCCTAAGAAGAATGGGGC
AAGAGTTTGGCTGGGCACCTATGATACCCCTGAGGGTGCAGCATTTGCTT
A
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