EY665438

Overview
NameEY665438
Unique NameEY665438
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665438_ssr479 microsatellite EY665438_ssr479:479..494. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.906e-29
Identity = 79/150 (52.67%), Postives = 92/150 (61.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMK                                        VWPP GL+KFETLSYLPPLS ES A+ +   LI    IP  +FE+   F
Sbjct:    1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMK----------------------------------------VWPPLGLQKFETLSYLPPLSIESLAK-QIEYLILKGWIPCLEFELEHPF 109          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.455e-27
Identity = 78/150 (52.00%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MA SMISSATVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS E  A+     L+    IP  +FE+   F
Sbjct:    1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSEQLAKEVDY-LLRKNLIPCLEFELEHGF 109          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.743e-26
Identity = 72/147 (48.98%), Postives = 82/147 (55.78%), Query Frame = 3
Query:   39 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM                                        QVWPP G KKFETLSYLPPL++E  A+     LI    IP  +FE+   F
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCM----------------------------------------QVWPPVGKKKFETLSYLPPLTEEQLAKEVEY-LIRKGWIPCLEFELEKGF 107          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.042e-25
Identity = 73/150 (48.67%), Postives = 84/150 (56.00%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSMISSAT+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM                                        QVWPP G KKFETLSYLP L+    A+     L+    IP  +FE+   F
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPDLTPVQLAKEVDY-LLRSKWIPCLEFELEEGF 109          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 77/152 (50.66%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   30 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K +NDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS ES A+     L+    +P  +FE+   F
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSSESLAKEVDY-LLRKNWVPCLEFELETGF 110          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 71/146 (48.63%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEV 467
            MASSM+S+A VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM                                        QVWPP G K +ETLSYLPPL+ E  A+     L+    +P  +FE+
Sbjct:    1 MASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCM----------------------------------------QVWPPRGKKFYETLSYLPPLTREQLAKEVEY-LLRKGWVPCLEFEL 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.825e-25
Identity = 69/146 (47.26%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEV 467
            MASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMK                                        VWP  G+KKFETLSYLPPL+ E  A      L+    IP  +FE+
Sbjct:    1 MASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMK----------------------------------------VWPTLGMKKFETLSYLPPLTREQLASEVEY-LLRSGWIPCLEFEL 105          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.505e-24
Identity = 77/152 (50.66%), Postives = 86/152 (56.58%), Query Frame = 3
Query:   30 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K +NDITSIASNGGRVQCM                                        QVWPP GLKKFETLSYLPPLS ES A+     L+    +P  +FE+   F
Sbjct:    1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRK-SNDITSIASNGGRVQCM----------------------------------------QVWPPLGLKKFETLSYLPPLSTESLAKEVDY-LLRKNWVPCLEFELEHGF 110          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 66/150 (44.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDESFAQGKSITLIPPAGIPGWKFEVGGAF 479
            MASS++SSA VA+ N AS AQASMVAPFTGLKSS+ FP T+K N DIT++ASN G+VQCMK                                        VWPP GL+KFETLSYLP +S+E  ++ +   L+    +P  +F++G  F
Sbjct:    1 MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMK----------------------------------------VWPPLGLRKFETLSYLPDMSNEQLSK-ECDYLLRNGWVPCVEFDIGSGF 109          
BLAST of EY665438 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.720e-24
Identity = 68/124 (54.84%), Postives = 73/124 (58.87%), Query Frame = 3
Query:   30 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVXXXXXQEFISSFACLN*RXXXXXXXXXXXXXXXXACMLQVWPPTGLKKFETLSYLPPLSDES 401
            MASSM+SSA VAT NR   AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM                                        QVWPP G KKFETLSYLPPLS+ES
Sbjct:    1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCM----------------------------------------QVWPPLGKKKFETLSYLPPLSEES 82          
The following BLAST results are available for this feature:
BLAST of EY665438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RBS_FAGCR5.906e-2952.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE1.455e-2752.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.743e-2648.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI1.042e-2548.67Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY5.174e-2550.66Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR5.174e-2548.63Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES8.825e-2547.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.505e-2450.66Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA5.720e-2444.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_MESCR5.720e-2454.84Ribulose bisphosphate carboxylase small chain 1, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-102-002-A09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665438 ID=EY665438; Name=EY665438; organism=Citrus sinensis; type=EST; length=885bp
TGCAAAGCTAGAAGAACGAGCAAGTACCAATGGCTTCCTCAATGATCTCA
TCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCAT
GGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCA
AGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTC
CAATGCATGAAGGTCATCATCATAATCATACAAGAATTCATTTCTTCTTT
TGCTTGTTTAAATTGACGGCTTTCTTCTTTTAGCTCTCAATTATGTTTTT
AATTAATTTTCTTGTGAGCTTGTATGTTACAGGTGTGGCCACCAACTGGC
TTGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAAG
CTTTGCTCAAGGGAAATCAATTACCTTAATCCCTCCGGCTGGGATCCCTG
GTTGGAAATTCGAAGTTGGAGGGGCTTTTCTCTCTCTCTCTCTCTGGCTT
CTCTTAATAAATACTATTTATTTTGGAGGAAACCTAATCTTTGTGCTTTA
AGAAAAAAAATTACAACTTGTCCTGAATTCTATTGGGCACAAAAAAATCC
ATTTCAAAATCCAAAAACCTGGATTAAAACAATTGGTTTAATTTAAATAC
TAAAGCCTTTTGGGGTAAAAAACGGGAATTTTTACCAGGCAAAAGGGGGG
GGGGAATTTTTGTGTTTTTTTCTTTTTTTTTTTTTTTTTTTCTTTTGGGG
GGCGGGGGAACTGGCAAAAAGAAGGGGGGGGGAACCGGGGAACCCCCCCC
AATTTCCCCCCAGAATATTTTCACACAGGGGACCCTCTCGTGGTAAAATG
GGAAAAACACTCCCCCTCTTCGGGGGGGGGCCAAC
back to top