CX043665

Overview
NameCX043665
Unique NameCX043665
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4944 contig Csv1_Contig4944:355..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX043665 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 40/51 (78.43%), Postives = 46/51 (90.20%), Query Frame = 2 
Query:  137 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 289
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX043665 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.428e-1878.43Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12F08_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12F08-K16-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043665 ID=CX043665; Name=CX043665; organism=Citrus sinensis; type=EST; length=731bp
CACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGT
CGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCG
TCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGT
GTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCG
GTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCCACTGTTTAT
GACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCACTAGTGGAT
GATACGCTACAGCGATGTAAATGAATGTGATGGGTCACCAACTCACCGGA
TGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTGGATTTCGCAA
CGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATTACGTGTCCTTCCTAT
CTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAGTAAATTAAAGACTGT
GATGTTTTTATATCATATAATTTAATAATTGTATGTGATGTGAGGATTGC
TAAGCTGTGGGCGGAGATGAAAGGTTGCTGGTTTTTGGGTTTAGGACATG
TTTTTGATTGTCATTTTGTAAGAGCCAAGATCATCCCTTCGTGGACGGTC
GTGATGAGCATATATGTTTTATTATTAATAAATAAGTTGCTTCTCTGAAT
GTTTAACGCTTGTCCAAAAAAAAAAAAAAAA
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