CX043276

Overview
NameCX043276
Unique NameCX043276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2462 contig Csv1_Contig2462:113..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_CAMAC (Tryptophan synthase beta chain 2, chloroplastic OS=Camptotheca acuminata GN=TSB PE=2 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.834e-98
Identity = 165/223 (73.99%), Postives = 198/223 (88.79%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVREF ++IGKETRKQA+EKWGGKPDVL+ACVG GSNA+GLFHEF++D+DVR+IGVEAAGFGLDSGKHAATL KGEVGV HGAMSYLLQD++GQI+  HS+  GL+YPGVGPE SFL+D GRAE+Y  TD+EA++A++RL RLEGI PALE SHALAFLEKLCPTLPNG KVV+NCSG GDKDV T + +
Sbjct:  241 KDATSEAIRDWVTNVESTHYILGSVAGPHPYPMMVREFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVDDKDVRMIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDIGRAEYYCCTDEEALEAFKRLSRLEGIIPALETSHALAFLEKLCPTLPNGTKVVLNCSGRGDKDVHTAIKH 463          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRBP2_ARATH (Tryptophan synthase beta chain 2, chloroplastic OS=Arabidopsis thaliana GN=TSB2 PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 5.521e-95
Identity = 159/223 (71.30%), Postives = 197/223 (88.34%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F ++IGKETRKQAMEKWGGKPDVL+ACVG GSNA+GLFHEF++D +VR+IGVEAAGFGLDSGKHAATL KG+VGV HGAMSYLLQD++GQI+  HS+  GL+YPGVGPE SFL+D GRAE+++ TD+EA++A++R+ RLEGI PALE SHALA LEKLCPTLP+GA+VV+N SG GDKDV T + Y
Sbjct:  250 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQAMEKWGGKPDVLVACVGGGSNAMGLFHEFVDDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFLKDVGRAEYFSVTDEEALEAFKRVSRLEGIIPALETSHALAHLEKLCPTLPDGARVVLNFSGRGDKDVQTAIKY 472          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_ARATH (Tryptophan synthase beta chain 1, chloroplastic OS=Arabidopsis thaliana GN=TSB1 PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 3.579e-94
Identity = 158/223 (70.85%), Postives = 195/223 (87.44%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F ++IGKETRKQA+EKWGGKPDVL+ACVG GSNA+GLFHEF+ND +VR+IGVEAAGFGLDSGKHAATL KG+VGV HGAMSYLLQD++GQI+  HS+  GL+YPGVGPE SF +D GRAE+Y+ TD+EA++A++R+ RLEGI PALE SHALA+LEKLCPTL +G +VV+N SG GDKDV TV  Y
Sbjct:  245 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGKETRKQALEKWGGKPDVLVACVGGGSNAMGLFHEFVNDTEVRMIGVEAAGFGLDSGKHAATLTKGDVGVLHGAMSYLLQDDDGQIIEPHSISAGLDYPGVGPEHSFFKDMGRAEYYSITDEEALEAFKRVSRLEGIIPALETSHALAYLEKLCPTLSDGTRVVLNFSGRGDKDVQTVAKY 467          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB1_MAIZE (Tryptophan synthase beta chain 1 (Fragment) OS=Zea mays GN=TSB1 PE=2 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.565e-92
Identity = 155/223 (69.51%), Postives = 191/223 (85.65%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVREF  +IGKETR+QAM KWGGKPDVL+ACVG GSNA+GLFHEF+ D+DVRLIGVEAAG G+D+ KHAATL KG+VGV HG+MSYLLQD++GQ++  HS+  GL+YPGVGPE SFL+D GRAE+ + TDQEA+ A++R+ RLEGI PALE SHALA+LEKLCPTLP+G +VV+NCSG GDKDV T   Y
Sbjct:  164 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMHKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLIGVEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLPDGVRVVLNCSGRGDKDVHTASKY 386          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_MAIZE (Tryptophan synthase beta chain 2, chloroplastic (Fragment) OS=Zea mays GN=TSB2 PE=2 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.662e-91
Identity = 153/223 (68.61%), Postives = 191/223 (85.65%), Query Frame = -1
Query:  135 KEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 803
            K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVREF  +IGKETR+QAM+KWGGKPDVL+ACVG GSNA+GLFHEF+ D+DVRL+G+EAAG G+D+ KHAATL KG+VGV HG+MSYLLQD++GQ++  HS+  GL+YPGVGPE SFL+D GRAE+ + TDQEA+ A++R+ RLEGI PALE SHALA+LEKLCPTL +G +VVVNCSG GDKDV T   Y
Sbjct:  218 KDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHKVIGKETRRQAMDKWGGKPDVLVACVGGGSNAMGLFHEFVEDQDVRLVGLEAAGHGVDTDKHAATLTKGQVGVLHGSMSYLLQDDDGQVIEPHSISAGLDYPGVGPEHSFLKDIGRAEYDSVTDQEALDAFKRVSRLEGIIPALETSHALAYLEKLCPTLADGVRVVVNCSGRGDKDVHTASKY 440          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB2_ANASP (Tryptophan synthase beta chain 2 OS=Anabaena sp. (strain PCC 7120) GN=trpB2 PE=3 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.244e-87
Identity = 144/226 (63.72%), Postives = 187/226 (82.74%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F ++IG+ETR QA+EKWGG PD+LLACVG GSNA+GLF+EF+N+  ++LIGVEAAG G+++ KHAATL KG VGV HGAMSYLLQDE+GQ++  HS+  GL+YPGVGPE S+L+D GRAE+Y+ TD+EA+ A+QRL RLEGI PALE +HA+A+LE LCP L    ++V+NCSG GDKDV TV  +
Sbjct:  184 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIKLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEEALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIVINCSGRGDKDVQTVAKF 409          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_ANAVT (Tryptophan synthase beta chain OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=trpB PE=3 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 4.237e-87
Identity = 143/226 (63.27%), Postives = 187/226 (82.74%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F ++IG+ETR QA+EKWGG PD+LLACVG GSNA+GLF+EF+N+  +RLIGVEAAG G+++ KHAATL KG VGV HGAMSYLLQDE+GQ++  HS+  GL+YPGVGPE S+L+D GRAE+Y+ TD++A+ A+QRL RLEGI PALE +HA+A+LE LCP L    ++++NCSG GDKDV TV  +
Sbjct:  184 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGQETRAQALEKWGGLPDILLACVGGGSNAMGLFYEFVNESSIRLIGVEAAGEGVNTEKHAATLTKGRVGVLHGAMSYLLQDEDGQVIEAHSISAGLDYPGVGPEHSYLKDVGRAEYYSVTDEQALAAFQRLSRLEGIIPALETAHAIAYLETLCPQLDGSPRIIINCSGRGDKDVQTVAKF 409          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_THEEB (Tryptophan synthase beta chain OS=Thermosynechococcus elongatus (strain BP-1) GN=trpB PE=3 SV=1)

HSP 1 Score: 318.931 bits (816), Expect = 2.103e-86
Identity = 147/226 (65.04%), Postives = 183/226 (80.97%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A+SEAIR+WV N+E ++Y+ G+V GPHP P++VREF ++IG ETR+Q +EKWGG PD+LLACVG GSNA+GLFHEF+ +  VRLIGVEAAG GLD+G HAATL KGEVGV HGAMSYLLQD +GQ++  HS+  GL+YPGVGPE S+L+D GRAE+Y+ TD EAV A  RL +LEGI PALE +HALA+LE LCP L    ++V+NCSG GDKDV+T+  Y
Sbjct:  181 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRQQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGLDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDTEAVAACVRLAQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRY 406          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_TRIEI (Tryptophan synthase beta chain OS=Trichodesmium erythraeum (strain IMS101) GN=trpB PE=3 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.685e-86
Identity = 147/223 (65.92%), Postives = 180/223 (80.72%), Query Frame = -1
Query:  144 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTV 812
            G  K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F ++IG ETR Q +EKW G PD+L+ACVG GSNA+GLFHEFIND  VR+IGVEAAG G+D+ KHAATL  G VGV HGAMSYLLQDEEGQI+  HS+  GL+YPGVGPE SFL+D+GR E+Y+ TD EAV A+QRL +LEGI PALE +HA+A+LE LCP L    ++V NCSG GDKDV TV
Sbjct:  181 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHAVIGVETRAQCLEKWNGLPDILMACVGGGSNAMGLFHEFINDPSVRMIGVEAAGKGVDTNKHAATLTLGRVGVLHGAMSYLLQDEEGQIIEPHSISAGLDYPGVGPEHSFLKDSGRVEYYSVTDNEAVAAFQRLSQLEGIIPALETAHAIAYLETLCPQLSGSPRIVFNCSGRGDKDVQTV 403          
BLAST of CX043276 vs. ExPASy Swiss-Prot
Match: TRPB_SYNY3 (Tryptophan synthase beta chain OS=Synechocystis sp. (strain PCC 6803) GN=trpB PE=3 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 1.044e-85
Identity = 145/226 (64.16%), Postives = 184/226 (81.42%), Query Frame = -1
Query:  135 GCFKEASSEAIRNWVGNLEKSYYLTGTVVGPHPCPIMVREFQSIIGKETRKQAMEKWGGKPDVLLACVGSGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGKHAATLAKGEVGVYHGAMSYLLQDEEGQILGTHSVGVGLEYPGVGPEISFLRDTGRAEFYTATDQEAVQAYQRLCRLEGIFPALEASHALAFLEKLCPTLPNGAKVVVNCSGGGDKDVDTVVNY 812
            G  K+A+SEAIR+WV N+E ++Y+ G+V GPHP P+MVR+F  +IG+ETR+QA++KWGG PD+LLACVG GSNA+GLF++FI++  VRLIG+EAAG  + SGKHAATL  G+ GV HGAMSYLLQD+EGQ+   HS+  GL+YPGVGPE S+L+D GRAE+Y+ TDQEA+ A QRL +LEGI PALE +HA A+LE LCP L NG ++V+NCSG GDKDV TV  Y
Sbjct:  182 GTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVRDFHRVIGQETRQQALKKWGGLPDILLACVGGGSNAMGLFYDFIDEPAVRLIGIEAAGESIVSGKHAATLTMGKPGVLHGAMSYLLQDKEGQVTEAHSISAGLDYPGVGPEHSYLKDAGRAEYYSVTDQEAITALQRLSQLEGIIPALETAHAFAYLETLCPQLKNGERIVINCSGRGDKDVQTVAKY 407          
The following BLAST results are available for this feature:
BLAST of CX043276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
TRPB_CAMAC1.834e-9873.99Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRBP2_ARATH5.521e-9571.30Tryptophan synthase beta chain 2, chloroplastic OS... [more]
TRPB1_ARATH3.579e-9470.85Tryptophan synthase beta chain 1, chloroplastic OS... [more]
TRPB1_MAIZE2.565e-9269.51Tryptophan synthase beta chain 1 (Fragment) OS=Zea... [more]
TRPB2_MAIZE1.662e-9168.61Tryptophan synthase beta chain 2, chloroplastic (F... [more]
TRPB2_ANASP3.244e-8763.72Tryptophan synthase beta chain 2 OS=Anabaena sp. (... [more]
TRPB_ANAVT4.237e-8763.27Tryptophan synthase beta chain OS=Anabaena variabi... [more]
TRPB_THEEB2.103e-8665.04Tryptophan synthase beta chain OS=Thermosynechococ... [more]
TRPB_TRIEI4.685e-8665.92Tryptophan synthase beta chain OS=Trichodesmium er... [more]
TRPB_SYNY31.044e-8564.16Tryptophan synthase beta chain OS=Synechocystis sp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A07_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A07-B14-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043276 ID=CX043276; Name=CX043276; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTGAGAAAAATAGGTCTTAAATTAATAGATTTCTCGGGTTGCTGCT
AAATTGACGGGAACCCTTAAATATTGTGGTCACCACTTCTTCGATCCATT
ACAATTTCTACGTCGATAATTATTGATTGTATCTGTAATTGACGACCGTG
TCGACGTCCTTATCCCCACCTCCACTACAGTTGACAACAACTTTTGCACC
ATTAGGTAAAGTAGGGCAAAGTTTCTCTAGAAATGCTAATGCATGAGATG
CCTCAAGGGCCGGAAATATGCCTTCTAATCTGCACAGCCGTTGATATGCT
TGGACAGCTTCTTGGTCAGTCGCAGTGTAGAACTCCGCACGCCCAGTGTC
CCTAAGAAAGCTTATCTCCGGGCCAACTCCTGGATACTCTAGCCCTACAC
CGACAGAATGAGTCCCCAAGATTTGGCCTTCTTCATCTTGCAACAAGTAG
CTCATGGCTCCATGATAAACACCCACTTCCCCTTTAGCCAGAGTTGCAGC
GTGTTTGCCGCTGTCCAAGCCAAATCCAGCAGCCTCCACTCCAATCAATC
TCACATCTTCATCATTTATGAATTCATGAAACAAACCCAACGCATTTGAT
CCACTGCCCACACAAGCCAGCAATACATCAGGCTTGCCTCCCCATTTTTC
CATTGCTTGTTTTCTCGTTTCTTTGCCTATGATTGATTGAAATTCTCGTA
CCATTATTGGACACGGGTGAGGCCCCACCACCGTACCCGTTAAATAATAG
CTTTTTTCTAAGTTCCCCACCCAATTTCTGATAGCTTCTGAGCTTGCTTC
TTTGAAACATCCATCCACTGC
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