CX043273

Overview
NameCX043273
Unique NameCX043273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length842
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig259 contig Csv1_Contig259:325..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 7.236e-82
Identity = 148/206 (71.84%), Postives = 169/206 (82.04%), Query Frame = -1
Query:  225 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLNTAAQM 842
            I+YHH ML SHLKVN +E IVGW+STG GV GGS+LIH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDRQL A FQEIP+DLRM++AERVGFD+LK+TSVDKLP+DLEGME+ MERLLTLIND+YKYVD  V G   PDN++GR +++ VASLPKL P  FD LVN             SITRTQLSLAEKLNTAAQM
Sbjct:   87 IDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPVDLRMVDAERVGFDVLKATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNIGRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITRTQLSLAEKLNTAAQM 292          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.384e-32
Identity = 71/205 (34.63%), Postives = 115/205 (56.10%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            +E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N             ++T++Q++L EKL
Sbjct:  154 MEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.384e-32
Identity = 71/205 (34.63%), Postives = 115/205 (56.10%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            +E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N             ++T++Q++L EKL
Sbjct:  154 MEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.384e-32
Identity = 71/205 (34.63%), Postives = 115/205 (56.10%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            +E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N             ++T++Q++L EKL
Sbjct:  150 MEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 354          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.807e-32
Identity = 71/205 (34.63%), Postives = 116/205 (56.59%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST-----SVDKLPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            +E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDTG ++G  ++KAYVS  + +  R +   F  + +     + ER+G D++  T      V  L SDL+ +     R+   ++ + +Y +D + G    DN+VGR L   V  +PK+ P  F+ ++N             ++T++Q++L EKL
Sbjct:  154 MEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAYVSTLMGVPGRTMGVMFTPLTVKYAYYDTERIGVDLIMKTCFSPNRVIGLSSDLQQVGGASARIQDALSTVLQYAEDVLSGKVSADNTVGRFLMSLVNQVPKIVPDDFETMLNSNINDLLMVTYLANLTQSQIALNEKL 358          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EIF3F_DICDI (Eukaryotic translation initiation factor 3 subunit F OS=Dictyostelium discoideum GN=eif3f PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.107e-29
Identity = 71/208 (34.13%), Postives = 117/208 (56.25%), Query Frame = -1
Query:  240 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPN--PVHLTVDTGFRNGEGTVKAYVSVNLSLG-DRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDK----LPSDLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKLN 842
            +EY   ML  HLK +P+E I+GW++TG  +   S  I+ FY  E+ N  P+HLTVDTG  N    + AY++ NLSL  +  L + F ++PL++   EAE  G + +  T  D+    L S+LE ++  + +L  ++  I  Y++   +G    D  +GR L++T+ +LPK +    DK++N             S+TR+QL++A K++
Sbjct:   72 MEYQRKMLDLHLKSSPREPIIGWYATGNDINENSVHINNFYRDEMGNSTPIHLTVDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQSTSLLSELESLQGSLTKLDEMLESITSYIESVEKGEIQGDPRLGRFLAKTIQALPKANAQVMDKVINNSVKDLLMIVYLSSLTRSQLAVATKIS 279          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.700e-28
Identity = 74/210 (35.24%), Postives = 109/210 (51.90%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            + Y   M   + KVNP E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +    ++L  L++ I KYVDD +     PDN+VGR L + + S+P ++   F ++ N              + +TQL L EKL
Sbjct:   66 LSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPVELTSYEPETFGLKLLQKT-VGVSPAHRPKTVPPMLDLAQISEASQKLQQLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRNLLLVITLSQLIKTQLQLNEKL 274          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.026e-27
Identity = 73/210 (34.76%), Postives = 108/210 (51.43%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            + Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S+P +S   F ++ N              + +TQL L EKL
Sbjct:   66 LSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMFNANVRNLLMVITLSQLIKTQLQLNEKL 274          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.026e-27
Identity = 73/210 (34.76%), Postives = 108/210 (51.43%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKSTSVDKLPS----------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            + Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   +    F  IP++L   E E  G  +L+ T V   P+          DL  +     +L +L++ I KYVDD +     PDN+VGR L + + S+P +S   F ++ N              + +TQL L EKL
Sbjct:   66 LSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKT-VGVAPANRPKTVPPMLDLAQISEASTKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMSHEQFTQMFNANVRNLLMVITLSQLIKTQLQLNEKL 274          
BLAST of CX043273 vs. ExPASy Swiss-Prot
Match: EI3F1_DROGR (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila grimshawi GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.026e-27
Identity = 73/209 (34.93%), Postives = 109/209 (52.15%), Query Frame = -1
Query:  243 IEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFRNGEGTVKAYVSVNLSLGDRQLAAQFQEIPLDLRMIEAERVGFDILKST---SVDKLPS------DLEGMEVLMERLLTLINDIYKYVDDTVEGHAVPDNSVGRILSETVASLPKLSPPAFDKLVNXXXXXXXXXXXXXSITRTQLSLAEKL 842
            + Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   +    F  IP++L   E E  G  +L+ T   S  + P       DL  +    ++L +L++ I KYVDD +     PDN+VGR L + + S+P ++   F ++ N              + +TQL L EKL
Sbjct:   66 LSYALDMYDLNRKVNSNESVVGWWATGNEVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKTGCMFTPIPVELTSYEPETFGLKLLQKTVGVSPAQRPKTVPPMLDLAQISEASQKLQSLLDLILKYVDDVIAHKVTPDNAVGRQLLDLIHSVPHMTHEQFTQMFNANVRDLLMVITLSQLIKTQLQLNEKL 274          
The following BLAST results are available for this feature:
BLAST of CX043273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EIF3F_ARATH7.236e-8271.84Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR1.384e-3234.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA1.384e-3234.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN1.384e-3234.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE1.807e-3234.63Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_DICDI7.107e-2934.13Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN2.700e-2835.24Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS1.026e-2734.76Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE1.026e-2734.76Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROGR1.026e-2734.93Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS07_10A05_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-10A05-B10-1-7.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043273 ID=CX043273; Name=CX043273; organism=Citrus sinensis; type=EST; length=842bp
AAAAAATTAATGCTAAATCTGACCAAAATGGATATTTGTTTCTCAATAGA
ACCCAAACCATTACAAAGCAATCTTGTTAAAATTGTGCAACTAATTTAAA
CTCTAGCTCATAAAATACAGCCTTTCCAGAAAGTAAATACGCACATTCCT
CAGAGTTTGTGATATATTAATTCAAACTCAAATCGCCTTAGCACATGAAT
TCATATGTCAGCGAGAAATTATGGCATCTGAGCAGCGGTGTTCAACTTTT
CTGCTAAGCTGAGCTGGGTCCTGGTGATACTTGACAAATATAGCAAGAGC
AACTGGTCCTGTAGGCTGTCATTTACAAGCTTGTCAAAAGCTGGAGGTGA
CAGTTTGGGAAGGGAGGCTACAGTCTCTGAAAGAATACGCCCTACACTAT
TATCAGGTACAGCATGCCCTTCCACAGTGTCATCAACATATTTGTAGATA
TCGTTAATAAGAGTTAGTAGCCGTTCCATCAGGACTTCCATTCCTTCCAA
ATCACTAGGGAGTTTGTCAACCGATGTTGACTTCAGAATATCGAATCCAA
CTCGCTCAGCTTCAATCATTCGAAGATCAAGAGGGATTTCTTGAAATTGT
GCAGCAAGCTGTCGATCTCCAAGAGACAAATTGACAGAAACATAAGCTTT
TACAGTACCCTCTCCATTTCTGAATCCTGTATCTACAGTCAGGTGGACAG
GATTAGGAACTTCGCGACAATAGAATTCATGGATCAAGGCACTGCCACCA
GTGACTCCCAACCCTGTAGAAAACCATCCAACAATCACTTCCTGAGGATT
CACCTTTAGGTGTGACTTTAACATGGTATGATGGTATTCAAT
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