CV885603

Overview
NameCV885603
Unique NameCV885603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9634 contig Csv1_Contig9634:22..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_ORYSJ (40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2)

HSP 1 Score: 324.709 bits (831), Expect = 4.154e-88
Identity = 157/190 (82.63%), Postives = 176/190 (92.63%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 635
            M+T ++KIQKDK  EPTEFE+TVAQA FDLEN NQELKSDLKDLYIN A+QMD+ GNRKA+++YVPYRLRKAY+KIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV RPR+RTLTAVHD +LEDVVYPAEIVGKRVRY LDG KI+KIFLDPKERNNTEYKL++FS VYR+L GKDVVFDYP+T+
Sbjct:    1 MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGKDVVFDYPMTE 190          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.579e-87
Identity = 155/190 (81.58%), Postives = 180/190 (94.74%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 635
            M+T  +KI KDKDAEPTEFEE VAQALFD ENTNQE+KSDLKDLYIN A+Q+DVSG +KA+V++VPYRLRK++RKIH RLVRELEKKFSGK+VVLIATRRI+RPPKKGSAVQRPRSRTLTAVHDAMLED+VYPAEIVGKRVRYRLDGSKI+K+FLDPK +N+TE KLE+F+GVYRKL+GKDVVF++P+T+
Sbjct:    1 MYTALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPLTE 190          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_BRAOL (40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 2.977e-86
Identity = 150/190 (78.95%), Postives = 174/190 (91.58%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 635
            MF+ + KI KDK   PTEFEE VAQA FDLENTNQELKSDLKDLYINQA+ MD++GNRKA+V+YVP+RLRKA+RKIHSRLVRELEKKFSG DV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH+AMLEDV YPAEIVGKR RYR+DG+KI+K++L+PKERNNTEYKLE+  GVYRKLTGKDVVF+YP+ D
Sbjct:    1 MFSAQNKIHKDKGVAPTEFEERVAQAFFDLENTNQELKSDLKDLYINQAVSMDIAGNRKAVVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMVGVYRKLTGKDVVFEYPVAD 190          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_SECCE (40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 6.633e-86
Identity = 153/190 (80.53%), Postives = 175/190 (92.11%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 635
            M+T +KKIQKDK  EP+EFE+TVAQA FDLEN NQELKSD+KDLYIN A QMDV+GNRKA+V++VPYRLRK +RKIH RLVRELEKKFSGKDVV++ATRRIVRPPKKGSAV RPR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDGSKIIKIFLDP ERNNTEYKL++F+ VYR+L GKDVV++YP+ +
Sbjct:    1 MYTARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKAVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGKDVVYEYPVAE 190          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS73_ARATH (40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2)

HSP 1 Score: 315.849 bits (808), Expect = 1.930e-85
Identity = 150/188 (79.79%), Postives = 175/188 (93.09%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 629
            MF+ + KI+KDK+AEPTE EE VAQALFDLENTNQELKS+LKDLYINQA+ MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ + TRRI+RPPKKG+AVQRPR+RTLT+VH+AMLEDV +PAEIVGKR RYRLDGSKI+K+FLD KE+NNTEYKLE+  GVYRKLTGKDVVF+YP+
Sbjct:    1 MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGKDVVFEYPV 188          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_HORVU (40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 7.333e-85
Identity = 154/190 (81.05%), Postives = 174/190 (91.58%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD 635
            M+T +KKIQKDK  EP+EFE+TVAQA FDLEN NQELKSDLKDLYIN AIQMDV GNRKA+V++VPYRLRK +RKIH RLVRELE+  SGKDVV +ATRRIVRPPKKGSAVQRPR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDG+K+IKI+LDPKERNNTEYKLE+FS VYR+L GKDVVF+YP+ +
Sbjct:    1 MYTARKKIQKDKGVEPSEFEDTVAQAFFDLENGNQELKSDLKDLYINTAIQMDVVGNRKAVVIHVPYRLRKPFRKIHVRLVRELER-VSGKDVVFVATRRIVRPPKKGSAVQRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFSAVYRRLCGKDVVFEYPVAE 189          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS72_ARATH (40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.787e-84
Identity = 149/191 (78.01%), Postives = 174/191 (91.10%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 638
            M++ + KI KDK   PTEFEE V QALFDLENTNQELKS+LKDLYINQA+QMD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ +ATRRI+RPPKKGSAVQRPR+RTLT+VH+AMLEDV YPAEIVGKR RYRLDG+KI+K+FLD K +N+TEYKLE+  GVYRKLTGKDVVF+YP+ +A
Sbjct:    1 MYSGQNKIHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAVQRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEYPVIEA 191          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS71_ARATH (40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.997e-82
Identity = 148/191 (77.49%), Postives = 174/191 (91.10%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA 638
            MF+ + KI K+K  E +E +E VAQA FDLENTNQELKS+LKDLY+N A+Q+D+SG RKAIVV VPYRLRKAYRKIH RLVRELEKKFSGKDV+LIATRRIVRPPKKGSA +RPR+RTLT+VH+A+L+DVV PAEIVGKR RYRLDG+KI+K+FLDPKERNNTEYK+E+FS VY+KLTGKDVVF++PIT+A
Sbjct:    1 MFSAQHKIHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAKRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFSAVYKKLTGKDVVFEFPITEA 191          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 1.142e-53
Identity = 107/191 (56.02%), Postives = 145/191 (75.92%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            MF+T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V   RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+VYP+EIVG+R+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGAGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of CV885603 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.491e-53
Identity = 107/191 (56.02%), Postives = 146/191 (76.44%), Query Frame = 3
Query:   66 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 626
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    KA++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+VYP+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDVVF++P
Sbjct:    1 MFSSSAKIVKANGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190          
The following BLAST results are available for this feature:
BLAST of CV885603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_ORYSJ4.154e-8882.6340S ribosomal protein S7 OS=Oryza sativa subsp. ja... [more]
RS7_AVIMR1.579e-8781.5840S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]
RS7_BRAOL2.977e-8678.9540S ribosomal protein S7 OS=Brassica oleracea GN=R... [more]
RS7_SECCE6.633e-8680.5340S ribosomal protein S7 OS=Secale cereale GN=RPS7... [more]
RS73_ARATH1.930e-8579.7940S ribosomal protein S7-3 OS=Arabidopsis thaliana... [more]
RS7_HORVU7.333e-8581.0540S ribosomal protein S7 OS=Hordeum vulgare GN=RPS... [more]
RS72_ARATH2.787e-8478.0140S ribosomal protein S7-2 OS=Arabidopsis thaliana... [more]
RS71_ARATH1.997e-8277.4940S ribosomal protein S7-1 OS=Arabidopsis thaliana... [more]
RS7_XENLA1.142e-5356.0240S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_ICTPU1.491e-5356.0240S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_016F05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_016_T3_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885603 ID=CV885603; Name=CV885603; organism=Citrus sinensis; type=EST; length=866bp
GCAAGCTTGTGTGTTTTTTTCTACTCGTGCATACAGATCTAAAAGCTTCG
CTGCGAGCTGTCAAGATGTTCACGACTAAGAAGAAAATCCAAAAAGACAA
GGATGCCGAACCTACTGAGTTTGAGGAGACAGTTGCCCAGGCACTGTTTG
ATTTGGAGAATACCAACCAGGAGCTTAAAAGTGACTTGAAAGATCTTTAC
ATTAATCAAGCCATTCAAATGGATGTTTCTGGAAACCGCAAGGCAATTGT
TGTCTATGTGCCTTACAGATTGAGGAAGGCTTATCGGAAGATTCATTCTC
GCCTTGTGAGAGAGCTGGAGAAGAAATTCAGTGGCAAGGATGTTGTACTC
ATTGCCACCCGAAGGATAGTCAGGCCACCAAAGAAAGGCTCTGCTGTTCA
GAGACCTCGCAGTCGCACACTCACAGCTGTTCATGATGCCATGCTTGAAG
ATGTAGTTTACCCAGCTGAGATTGTTGGAAAACGTGTCAGATACCGTCTC
GATGGATCCAAAATAATCAAGATTTTCTTGGATCCAAAGGAGAGGAACAA
CACGGAGTACAAGTTGGAGTCTTTTTCAGGGGTTTACAGAAAGCTTACCG
GCAAAGACGTGGTTTTTGATTATCCAATTACAGATGCCTGAAGAGTTGTT
GCAGATGATCATTTGTGTTTGTCACTGTTTATTTTGTTGCACTATAATTT
TGATTTGGATAGGGTACTATTTAAAATTTTGACTCTTAAATTTGGTATGA
CATCATTTTGCATAGGACAGATGAAGCTTTATGAATTTCTTTTTGTTTCT
TCATTTCATGAAATTGTTGAGCTGAGAAACATCGTGCCTTCTAGTTGAAG
TGAGATCTGTTTACTT
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