EY665412

Overview
NameEY665412
Unique NameEY665412
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1386
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 9.628e-41
Identity = 80/89 (89.89%), Postives = 85/89 (95.51%), Query Frame = 2
Query:  149 HTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            +TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   24 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.659e-40
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 2
Query:  149 HTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            +TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.659e-40
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 2
Query:  149 HTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            +TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.659e-40
Identity = 78/89 (87.64%), Postives = 86/89 (96.63%), Query Frame = 2
Query:  149 HTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            +TGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 9.964e-38
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 2
Query:  155 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            GPLS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   18 GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 6.458e-37
Identity = 74/89 (83.15%), Postives = 82/89 (92.13%), Query Frame = 2
Query:  149 HTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            + GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   25 NVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 8.454e-29
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 2
Query:  155 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            GPLSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   28 GPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of EY665412 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.445e-20
Identity = 48/87 (55.17%), Postives = 66/87 (75.86%), Query Frame = 2
Query:  155 GPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 415
            GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   29 GPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of EY665412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME9.628e-4189.89Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE3.659e-4087.64Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN3.659e-4087.64Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN3.659e-4087.64Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_DICDI9.964e-3886.21Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_CAEEL6.458e-3783.15Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO8.454e-2972.41Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST1.445e-2055.17Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665412 ID=EY665412; Name=EY665412; organism=Citrus sinensis; type=EST; length=1386bp
GCGACGTCAGGATTCCGGGTCGACCACGCGTCCGCTCGTCGTCCGCCGCA
GTTAGGTTGTCGTTCAGTCTTGGCTTGATTAAGCAATTGTCAAACATGAG
CAGTCGGCCGATGGAGGAAGATAATGTCAAAAATGAGGAAGAGGAATTCA
CACAGGTCCACTTTCTGTTTTGATGATGAGTGTTAAAAACAATACCCAGG
TGCTTATTAACTGTCGGAACAACAAGAAGCTTCTTGGTCGTGTGAGAGCT
TTTGATCGTCACTGCAATATGGTTCTTGAGAATGTCAGGGAGATGTGGAC
TGAGTTGCCTAAGACTGGGAAAGGCAAGAAAAAGGCTCTTCCAGTTAACA
AGGATAGATTCATCAGTAAGATGTTTCTCCGAGGAGATTCTGTGATCATT
GTTCTTAGGAATCCCAAGTGAAGTACACACCTAGCTTGACAGCCTCAGCA
ATTTTAACGAAAGATCTATATGGACAATACTGGTTGTGATGGGTAAAAAT
TGACCANCAAGCTTAGATTTGTTTGAAGATGTTCGCATGGTATTTGTGCA
ATTGTGCTGCCAAGTTTGGGAGATGGTTGGAATATCTAAGGTGTCCTGAC
ATAAGGTTGACTTTTTGGGGGGTGGAAATCCATGGGACAAAAATGTATGG
TGGGAACCCTTAACAATTTCACTTCAAAGGCCGTTACTTTATTAAATCTG
GATCGGAAATTNGCCAAAGCCTGGGATCCCCACCGACCCCGATTAAAAAT
TTTCTTTTTGAAAAATAAAAAAGGGGGGCCCCCTAAAAACCAACTTAATC
CCGGGGCGCACCTATTTCTCCTATGGCACAAATTATTTCGGGGCTTTTTA
ACCCGAGGGGAAACTGGGTCACCTATTACCTTGACAACCCTTTCCATGGG
ATAACTAAGGCCCCTATGCCTCCACAATGCCACTAGGGAAGGACCCCTGG
GCCCTACGCGGGGGGGGACACCGGCCAACTGCCCCTCCCCGCTTTTCTCT
CTTTCATCCCGTTCCGGCTTACGGGATAATGAAATACACTCACTATACAT
TGTAAGAGGACAGTCTCTTAGATATATACATAAACCACTACGAGAAGTTC
GAATAANTNGAATAAACACGCACTACGTGAGTACGGAGGCTAGACGACAC
CACGAAGGTGGAGGACCTGAGAGATCAGCACGATAGAAAACGATGGATAA
TATCCTCTATGAGTTTGTTNAGTTATTTACGGATTAACGGAGATTACTGC
ACGAACAAATGTGATCAGATGGACACGATCAGACAGACGCAATAACTACA
AGATCAGAAGCGTCAATACTGTACATAGCATACGAGATCATAAATNGCGC
AAGACATAAATGTACATTAACATATATGATGACGTT
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