EY665404
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TF2H4_DICDI (General transcription factor IIH subunit 4 OS=Dictyostelium discoideum GN=gtf2h4 PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 6.350e-28 Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 2 Query: 11 FIPTKLATNLSMSLTDS-----------SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFESCL*LCKRSKWF 457 F PT+L +L+ T S + +++G+IV+ETN+R+YAY++S L +L LF K+ Y+LPNL VG IT+ES+ A +GITA+QII F++ N+HP A+ +P+ V +QI LWE++ NR+ T + Y+ FP+ D + + L K ++ Sbjct: 295 FYPTRLIISLTTGKTLSLIQSISSERTQTQKEQGYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTNDCYIATLKFAKEQDYY 454
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TF2H4_PANTR (General transcription factor IIH subunit 4 OS=Pan troglodytes GN=GTF2H4 PE=3 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.415e-27 Identity = 61/142 (42.96%), Postives = 95/142 (66.90%), Query Frame = 2 Query: 11 FIPTKLATNLSMSLTDS--SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFESCL 430 + PT+LA NLS ++ + + + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE L Sbjct: 281 YYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLL 422
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TF2H4_HUMAN (General transcription factor IIH subunit 4 OS=Homo sapiens GN=GTF2H4 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 1.415e-27 Identity = 61/142 (42.96%), Postives = 95/142 (66.90%), Query Frame = 2 Query: 11 FIPTKLATNLSMSLTDS--SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFESCL 430 + PT+LA NLS ++ + + + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE L Sbjct: 281 YYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLL 422
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TF2H4_MOUSE (General transcription factor IIH subunit 4 OS=Mus musculus GN=Gtf2h4 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.847e-27 Identity = 61/142 (42.96%), Postives = 95/142 (66.90%), Query Frame = 2 Query: 11 FIPTKLATNLSMSLTDS--SARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFESCL 430 + PT+LA NLS ++ + + + GFIVVETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GITA+QII FL+ AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE L Sbjct: 282 YYPTRLAINLSSGVSGAGGTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLL 423
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_SCHPO (RNA polymerase II transcription factor B subunit 2 OS=Schizosaccharomyces pombe GN=tfb2 PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 6.571e-25 Identity = 57/146 (39.04%), Postives = 90/146 (61.64%), Query Frame = 2 Query: 11 FIPTKLATNLSMSLTDSSARK------EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFESCL 430 F PT+LAT L+ ++ +GFI+VETN+R+YAY++S L I+ LF+ + + NL+VG IT++S+ A NGI AEQII++L +AHP++ +P +P + DQI LWE + NR+ TP + +F + F+ + Sbjct: 263 FYPTRLATGLTTDYRSLHGKQSENDDDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQAV 408
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_YARLI (RNA polymerase II transcription factor B subunit 2 OS=Yarrowia lipolytica GN=TFB2 PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.695e-23 Identity = 56/155 (36.13%), Postives = 90/155 (58.06%), Query Frame = 2 Query: 11 FIPTKLATNLSM------------------SLTDSSARKEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRVADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 421 F PT+LAT L+ +++ S A GFI++ETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A NGITAEQII++L +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D ++ Sbjct: 265 FYPTRLATTLTSETAALRTASQSMEAATQDTISSSVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYK 419 HSP 2 Score: 21.1718 bits (43), Expect = 1.695e-23 Identity = 11/42 (26.19%), Postives = 21/42 (50.00%), Query Frame = 3 Query: 420 KAACDYARDQSGLLWEDPKKMRLVVKAKIHMHMKESLRGQNK 545 K YA++ LL+E+P K + V + E ++ +N+ Sbjct: 419 KDVSTYAKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_KLULA (RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces lactis GN=TFB2 PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.252e-21 Identity = 49/136 (36.03%), Postives = 81/136 (59.56%), Query Frame = 2 Query: 71 KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPR------------------VADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFES 424 ++G +++ETNF++Y+YS S L IL LF ++ + N++ G +T+ES+ NA NGITAEQII++L+ +AHPR V + + +P V DQIRLW+ +L+R+ + Y +F S +++ Sbjct: 320 QDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDGYLYTDFESYQEYQT 455 HSP 2 Score: 25.0238 bits (53), Expect = 4.252e-21 Identity = 10/28 (35.71%), Postives = 15/28 (53.57%), Query Frame = 3 Query: 420 KAACDYARDQSGLLWEDPKKMRLVVKAK 503 + DYA+D LLW++ KK V + Sbjct: 454 QTVADYAKDIGVLLWQNEKKKMFFVSTE 481
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_ASHGO (RNA polymerase II transcription factor B subunit 2 OS=Ashbya gossypii GN=TFB2 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.378e-18 Identity = 44/134 (32.84%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 74 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFE 421 +G ++VETNF++Y+YS S L IL LF ++ + N++ G IT+ES+ A NGITA+QII++++ +AHP++ D + +P V DQI+LW+ +L+R+ + + +F + ++ Sbjct: 338 DGALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFRDFDNLQEYQ 471 HSP 2 Score: 24.2534 bits (51), Expect = 1.378e-18 Identity = 11/20 (55.00%), Postives = 11/20 (55.00%), Query Frame = 3 Query: 435 YARDQSGLLWEDPKKMRLVV 494 YARD LLW D KK V Sbjct: 476 YARDIGVLLWSDDKKKMFFV 495
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_YEAST (RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces cerevisiae GN=TFB2 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.792e-18 Identity = 46/127 (36.22%), Postives = 75/127 (59.06%), Query Frame = 2 Query: 74 EGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEF 400 +G ++VETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A NGITA+QII++L+ +AHP++ + + +P V DQIRLW+ +L+RV Y +F Sbjct: 336 DGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDF 462 HSP 2 Score: 23.8682 bits (50), Expect = 1.792e-18 Identity = 9/20 (45.00%), Postives = 13/20 (65.00%), Query Frame = 3 Query: 435 YARDQSGLLWEDPKKMRLVV 494 YA+D LLW+D KK + + Sbjct: 474 YAQDIGVLLWKDDKKKKFFI 493
BLAST of EY665404 vs. ExPASy Swiss-Prot
Match: TFB2_CANGA (RNA polymerase II transcription factor B subunit 2 OS=Candida glabrata GN=TFB2 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 2.956e-17 Identity = 48/142 (33.80%), Postives = 79/142 (55.63%), Query Frame = 2 Query: 71 KEGFIVVETNFRMYAYSTSKLHCEILRLFSKVEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQNAHPRV------------------ADRMPSVPENVCDQIRLWESDLNRVEMTPAHYYDEFPSRDVFESCL*LCK 442 ++G +++ETNF++Y+Y S L IL LF ++ + N++ G IT+ES+ A NGITA+Q+I++L+ +AHP++ D + +P V DQI+LW+ +L+RV Y +F + F LCK Sbjct: 325 QDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQLELDRVLTYEGSLYIDFDTAQDFNM---LCK 463 The following BLAST results are available for this feature:
BLAST of EY665404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >EY665404 ID=EY665404; Name=EY665404; organism=Citrus sinensis; type=EST; length=1039bpback to top |