EY665403

Overview
NameEY665403
Unique NameEY665403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1367
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665403_ssr295 microsatellite EY665403_ssr295:295..306. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.629e-32
Identity = 77/123 (62.60%), Postives = 91/123 (73.98%), Query Frame = 1
Query:  169 MASATLSVSKSALQGNGKGFSQFSGLLNSAS-LPFGRTSSDDFHSFIALQTSALRSSTIGYRNVAAQAK-LMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALGI 531
            MASAT SV+K A++ NGKGFS+FSGL NS+  LPF R SSDDFHS +  QT+A+ SS    +++  +AK L  AIN FGRIG NFLRCWHGR DS  +V AINDTG VK AS  LKY+S LGI
Sbjct:    1 MASATFSVAKPAIKANGKGFSEFSGLRNSSRHLPFSRKSSDDFHSLVTFQTNAVGSSGGHKKSLVVEAKQLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGI 123          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 2.691e-27
Identity = 81/163 (49.69%), Postives = 96/163 (58.90%), Query Frame = 1
Query:  169 MASATLSVSKSALQGNGKGFSQFSGLLNS-ASLPFGRT-SSDDFHSFIALQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALGI--------SETMLNHLD*WHLXXXXXXXXXXXXNPSILPW 627
            MAS T SV K        GF++FSGL +S ASLPFG+  SSD+F S ++ QTSA+ SS  GYR    +AKL  AIN FGRIG NFLRCWHGR DS  ++ AINDTG VK AS  LKY+S LGI         ET ++                   NPS+LPW
Sbjct:    1 MASVTFSVPK--------GFTEFSGLRSSSASLPFGKKLSSDEFVSIVSFQTSAMGSSG-GYRKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTGGVKQASHLLKYDSTLGIFDADVKPSGETAIS-------VDGKIIQVVSNRNPSLLPW 147          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.744e-26
Identity = 69/123 (56.10%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  169 MASATLSVSKSALQGNGKGFSQFSGLLNSASLPFGRTSSDDFHSFIALQTSAL---RSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALG 528
            MAS  LS++  +L+   KGFS+FSGL +++SLPFGR  SDD  +F++ QT+A+   RSS    +N   +AKL  AIN FGRIG NFLRCWHGR DS  +V  INDTG VK AS  LKY+S LG
Sbjct:    1 MASNMLSIANPSLRVYNKGFSEFSGL-HTSSLPFGRKGSDDLMAFVSFQTNAVGGKRSS----QNGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILG 118          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.075e-26
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = 1
Query:  199 SALQGNGKGFSQFSGLLNSASLPFGRTSSDDFHSFIALQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALGI 531
            S+LQ + KGFS+FSGL  S+++PFGR ++DD  S +A QTS +       +    +AKL  AIN FGRIG NFLRCWHGR DS  +V AINDTG VK AS  LKY+S LGI
Sbjct:    2 SSLQVSNKGFSEFSGLRTSSAIPFGRKTNDDLLSVVAFQTSVIGGGNS--KRGVVEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTGGVKQASHLLKYDSTLGI 110          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.612e-25
Identity = 78/157 (49.68%), Postives = 94/157 (59.87%), Query Frame = 1
Query:  169 MASATLSVSKSALQGNGKGFSQFSGLLNSASLPFGRTS-SDDFHSFIALQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*D-SLHEVSAINDTGSVKHASQALKYNSALGISETMLNHL-D*WHLXXXXXXXXXXXXNPSILPWG 630
            MAS+ LS +   LQ  G G S+FSGL +SASLP  R + SDDF S ++ +T A+ +S  G R    +AKL  AIN FGRIG NFLRCWHGR D S  +V AINDTG VK AS  LKY+S LGI +  +  + D                NPS LPWG
Sbjct:    1 MASSMLSATTVPLQQGG-GLSEFSGLRSSASLPMRRNATSDDFMSAVSFRTHAVGTSG-GPRRAPTEAKLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTGGVKQASHLLKYDSTLGIFDADVKPVGDNAISVDGKVIKVVSDRNPSNLPWG 155          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.219e-16
Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1
Query:  229 SQFSGLLNSASLPFGRTSSDDFHSFIALQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALGISETMLNHLD 558
            + FSGL +S S+ F R +S  FH  IA Q +   +     R     AKL  AIN FGRIG NFLRCWHGR DS  +V  +ND+G VK A+  LKY+S LG  +  +  +D
Sbjct:   40 ADFSGLRSSNSVTFTREAS--FHDVIAAQLTTKPTGAAPVRGETV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKSATHLLKYDSILGTFKADVKIID 146          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 6.219e-16
Identity = 46/100 (46.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  232 QFSGLLNSASLPFGRTSSDD-FHSFIALQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALG 528
            +FSGL +++ + +  ++ D  F+  +A Q ++  + +   + V   AKL  AIN FGRIG NFLRCWHGR DS  EV  +ND+G VK+AS  LKY+S LG
Sbjct:   39 EFSGLKSTSCISYVHSARDSSFYDVVAAQLTSKANGSTAVKGVTV-AKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLG 137          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.000e-14
Identity = 48/101 (47.52%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  229 SQFSGLLNSASLPFGRTSSDDFHSFIA-LQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALG 528
            ++F+GL +S  + F    S  F    A L     RS+ +    VA   KL  AIN FGRIG NFLRCWHGR DS  +V  +ND+G VK+AS  LKY+S LG
Sbjct:    9 AEFAGLRSSGCVTFSNKESSFFDVVSAQLTPKTTRSTPVKGETVA---KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLG 106          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.297e-13
Identity = 49/113 (43.36%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  352 NVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALGISETMLNHLD*WHL-XXXXXXXXXXXXNPSILPWGTWQQPGDEWNGWLIQEGGG 687
            +V A+ K+  AIN FGRIG NFLRCWHGR ++L +V AIND+G VK AS  LKY+S LG     +  +D  H+             +P  LPW        E N  L+ EG G
Sbjct:   31 DVRAEKKIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSGGVKQASHLLKYDSTLGTFAADVKIVDDSHISVDGKQIKIVSSRDPLQLPW-------KEMNIDLVIEGTG 136          
BLAST of EY665403 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.889e-13
Identity = 55/130 (42.31%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  169 MASATLSVSKSALQGNGKGFSQFSGLL---NSASLP-------FGRTSSDDFHSFIALQTSALRSSTIGYRNVAAQAKLMSAINVFGRIGTNFLRCWHGR*DSLHEVSAINDTGSVKHASQALKYNSALG 528
            ++S   + SKSA+      F+QFSGL    N+A L        FG  S  +   F A+ T    + T      A   K+  AIN FGRIG NF+RCW GR DS  +V  INDT  VK AS  LKY+S LG
Sbjct:    7 VSSVFSTSSKSAVCSGRSSFAQFSGLKKVNNTARLQTAEQGSAFGGVSDANDAFFNAVNTMGAPARTSN----APSMKVRVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTSGVKTASHLLKYDSILG 132          
The following BLAST results are available for this feature:
BLAST of EY665403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
G3PA_PEA1.629e-3262.60Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH2.691e-2749.69Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL1.744e-2656.10Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC5.075e-2656.76Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE5.612e-2549.68Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_SPIOL6.219e-1646.36Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_PEA6.219e-1646.00Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC2.000e-1447.52Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_CHLRE1.297e-1343.36Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_GRAVE2.889e-1342.31Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-E06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665403 ID=EY665403; Name=EY665403; organism=Citrus sinensis; type=EST; length=1367bp
TTAGTTGTTATTTTTTTTTTGGCGCGACGGTCCGGATCTCGGGTCGACCA
CGCGTCCGATTCATTATTACTTGATCACATATAACATTTTACAGCATCTT
GTCTTGGCTTAGCTCACCTTAGCGACCACTGCTATGCTCTTGCTTGCATC
ATCCATCAAATACCTATCATGGCTTCGGCCACTCTCTCTGTATCCAAATC
AGCTCTTCAGGGAAATGGTAAGGGATTCTCACAATTCTCAGGTCTACTCA
ACTCTGCAAGCCTTCCTTTTGGCAGGACATCTTCTGATGACTTCCATTCA
TTCATTGCTCTCCAGACCTCTGCTTTACGAAGCAGCACCATCGGGTACAG
GAATGTTGCTGCTCAGGCAAAGCTGATGAGTGCAATCAATGTGTTTGGTA
GAATTGGTACGAACTTCTTGAGGTGCTGGCACGGCCGCTAGGACTCTCTG
CATGAAGTCTCTGCGATCAATGACACCGGAAGTGTCAAGCATGCCTCTCA
AGCTCTCAAGTACAACTCCGCCCTCGGCATCTCTGAGACGATGTTAAACC
ATTTGGACTGATGGCATCTCTGTTGATGCCAGGTCATCTAGGTAGTTTCT
ATCTGCAACCCGTCAATACTCCCTTGGGGGACTTGGCAACAACCTGGAGA
TGAATGGAACGGATGGTTGATACAAGAAGGGGGGGGCAACCAATCCGGGT
GGGTGCGAAAAAACCTAATGACTTCCCGGAAAGGGGGAAACCAACTAAAT
TGGGGGGGTAAAGGGAGGCTAAAGGCGAAAGACCCCAACAATTAGGCTTT
AGCAAACATTGACTTCCACTATCATGTGTTTGACAAATATTGGATTTCGG
GAACCCCACCCACCCCCCAAAGGGCACCGGGTACCTTTCCCCCTGGCTCT
GGGAGAAAACTCGTAAATTAACAATATTGGGGGAAATGGGCCTGCCACCA
ACAAGAAATAAGTTTCTTTTGAACCAACTCCTTGATTTTTTGTTAAAACT
CAAAAAAACCCTTAAACCATATTATGTGTCCCCCGAACCTTCCTCTATGT
AATAACAAAAACCACACGAAGAAATAATAACAAGAAACATGGATTCCAAA
TGAAGAGATAAAAATCAAAATTAGCGCAATACAAATCAAAGTACTGCCAT
CTCGCACAATAATACGGAAGGCACTGATAGAACGAAGAAGAAAAAAATAT
CAACTCATNGGTACACTCGTAGTAGATTTGGAATAACAAATAAAATGTGA
TAAAAATATATANAAGCANTAATGCAGTACATATTTTGATAGNTGAATTA
AAACAATACAAGATNTCGATGATAGTGAGTTAAAATACTTTTCTTGATAT
GCAGCATCAACAATATG
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