CV885465

Overview
NameCV885465
Unique NameCV885465
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3422 contig Csv1_Contig3422:563..1555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: SYP32_ARATH (Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.130e-61
Identity = 143/238 (60.08%), Postives = 159/238 (66.81%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVSNSRND----GIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSS-QLFPRKQ-DGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            QELT VIKQ+I+ALNSA+VDLQL  +S+ND                   DLK RLM  TKEFK+VLTMRTEN+KVHESRRQLFSS ASK+S NPFVRQ                  WANGS SSS QL P K  +GES PLL                   MVPLQD+YMQ RAEAL  VESTIHEL +IF QLAT+VSQQGEIAIRID+NM+DT+ANVEGAQ  L +YLNSISSNRW
Sbjct:   97 QELTVVIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLFSSNASKESTNPFVRQRPLAAKAAASESVPLP--WANGSSSSSSQLVPWKPGEGESSPLLQQSQQQQQQQQQQ------MVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRW 326          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: SYP31_ARATH (Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.582e-35
Identity = 101/243 (41.56%), Postives = 133/243 (54.73%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVSNSR--NDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDS-------ANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRK--QDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            QELT +I+ DIT LN A+ DLQ + N    +                DLK RLM ATK+ ++VLT R+EN+K HE+R+QLFS+  + DS       + P                     P   G+P  SQL  R   ++  SQ +                   Q VP Q++Y QSRA AL +VES I EL  IF QLAT+V+QQGE+AIRID+NMD+++ NVEGA+ ALL++L  ISSNRW
Sbjct:   86 QELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQM-------------EMSLLQQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRW 315          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: STX5_DROME (Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 2.343e-24
Identity = 77/233 (33.05%), Postives = 110/233 (47.21%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVS-NSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            QELT +IK D+ ALN  +  LQ +S + R                  L+++L S + +FK++L +RTENLK  ++RR  FS      +A+                           SPS+++        E+Q +                    +    D+Y+Q RAE +QN+ESTI ELG IF QLA +V +Q EI  RID N+ D   N+E A G +LKY  S+S NRW
Sbjct:  239 QELTYIIKGDLNALNQQIARLQDISKDQRRHTNGKHLVSHSSNMVLALQSKLASMSTDFKQILEVRTENLKQQKTRRDQFSQGPGPLAAHTV-------------------------SPSTAKQGSLLLSEENQAVSIDMGSSDTTPLLSTQTQMAIYDDSDNYVQQRAETMQNIESTIVELGGIFQQLAHMVKEQEEIVERIDTNVADAELNIEAAHGEILKYFQSVSKNRW 446          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: STX5_HUMAN (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.219e-24
Identity = 80/232 (34.48%), Postives = 107/232 (46.12%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVSNSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            +ELT +IKQDI +LN  +  LQ    ++                  L+++L S + +FK VL +RTENLK   SRR+ FS      SA P                       A    S            SQ L                   Q++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  133 EELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPV--SALPLAPNHLGGGAVVLG---------AESHASKDVAIDMMDSRTSQQL-------------------QLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: STX5_BOVIN (Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.219e-24
Identity = 80/232 (34.48%), Postives = 107/232 (46.12%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVSNSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            +ELT +IKQDI +LN  +  LQ    ++                  L+++L S + +FK VL +RTENLK   SRR+ FS      SA P                       A    S            SQ L                   Q++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  133 EELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQFSRAPV--SALPLAPNHLGGGAVVLG---------AESRASGDVAIDMMDSRTSQQL-------------------QLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: STX5_RAT (Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.518e-23
Identity = 79/232 (34.05%), Postives = 111/232 (47.84%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVSNSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            +ELT +IKQDI +LN  +  LQ    ++                  L+++L S + +FK VL +RTENLK   +RR+ FS      SA P                          +P++    P    GES+                     Q++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  133 EELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQFSRAPV--SALPL-------------------------APNNLGGGPIVLGGESRA---SRDVAIDMMDPRTSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: STX5_MOUSE (Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.983e-23
Identity = 80/232 (34.48%), Postives = 111/232 (47.84%), Query Frame = -3
Query:  296 QELTAVIKQDITALNSAVVDLQLVSNSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 991
            +ELT +IKQDI +LN  +  LQ    ++                  L+++L S + +FK VL +RTENLK   +RR+ FS      SA P                       A+   +   + PR     SQ L                   Q++  QDSY+QSRA+ +QN+ESTI ELG+IF QLA +V +Q E   RIDEN+     +VE A   +LKY  S++SNRW
Sbjct:  133 EELTYIIKQDINSLNKQIAQLQDFVRAKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQFSRAPV--SALPLAPNNLGGGPIILGAESR-----ASRDVAIDMMDPRT----SQQL-------------------QLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRW 334          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: STX3_CAEEL (Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.680e-20
Identity = 67/230 (29.13%), Postives = 105/230 (45.65%), Query Frame = -3
Query:  296 LTAVIKQDITALNSAVVDLQLVSNSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 985
            L++++K DIT LN  +  LQ  S  R   +              L+++L +  K+++ VL + TE +K  ++RR  FSS A+     P                       +  +  S  L   +Q G S   L                    +     Y Q+R+  +  +E +I ELG IF+QLA+LVS+QGE+  RID N++DT  N++ A   L++YL +IS NRW
Sbjct:  187 LSSIVKSDITGLNKQIGQLQEFSKRRAGNMKNQNSGHIQLVVVGLQSKLANVGKDYQSVLEISTETMKAEKNRRDKFSSGAAVPMGLPSSS--------------------SGANVRSKLLQDDEQHGSSSIALDMGALSNMQSQQTMQQRDSSL----EYAQARSNTMATIEGSISELGQIFSQLASLVSEQGEMITRIDSNVEDTALNIDMAHSELVRYLQNISKNRW 392          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: SED5_SCHPO (Integral membrane protein sed5 OS=Schizosaccharomyces pombe GN=sed5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.798e-20
Identity = 72/235 (30.64%), Postives = 114/235 (48.51%), Query Frame = -3
Query:  299 QELTAVIKQDITALNSAVVDLQ-LVSNSRNDGIXXXXXXXXXXXXXDLKNRLMSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQXXXXXXXXXXXXXXXXXPWANGSPSSSQLFPRKQDGESQPLLXXXXXXXXXXXXXXXXXXQMVPLQ---DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 991
            QELT  IKQ +++LNS +  LQ +V  +RN                 L+N L + +  FK++L +RT+N+K  ++R + F +++S + ANP +                          S + + P     + +P                    QM  L+   D+Y Q R  ++QN+ESTI ELG IF+QLA +VS+Q E   RID + DD ++N+  AQ  ++K+   +SSNR
Sbjct:   82 QELTFQIKQSLSSLNSDIASLQQVVKGNRNK--PAQMNQHSENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEKFVASSSMN-ANPLIN-------------------------SGNSISPFADYNDPKPEANEDYLSLNLGDGANTRYEQMALLESQTDTYSQQRMSSIQNIESTITELGGIFSQLAQMVSEQRETVQRIDMHTDDIVSNIGSAQREIVKFYERMSSNR 288          
BLAST of CV885465 vs. ExPASy Swiss-Prot
Match: SED5_YEAST (Integral membrane protein SED5 OS=Saccharomyces cerevisiae GN=SED5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-15
Identity = 38/70 (54.29%), Postives = 51/70 (72.86%), Query Frame = -3
Query:  296 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 505
            Y+Q R  A++ +ESTI E+GN+F QLA++V +QGE+  RID N+DD   N+ GAQ  LLKY + I SNRW
Sbjct:  251 YLQERNRAVETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNISGAQRELLKYFDRIKSNRW 320          
The following BLAST results are available for this feature:
BLAST of CV885465 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYP32_ARATH3.130e-6160.08Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 ... [more]
SYP31_ARATH8.582e-3541.56Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 ... [more]
STX5_DROME2.343e-2433.05Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2... [more]
STX5_HUMAN5.219e-2434.48Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
STX5_BOVIN5.219e-2434.48Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1[more]
STX5_RAT1.518e-2334.05Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2[more]
STX5_MOUSE1.983e-2334.48Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3[more]
STX3_CAEEL2.680e-2029.13Putative syntaxin-3 OS=Caenorhabditis elegans GN=s... [more]
SED5_SCHPO7.798e-2030.64Integral membrane protein sed5 OS=Schizosaccharomy... [more]
SED5_YEAST1.165e-1554.29Integral membrane protein SED5 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_2_015H01_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_015_T7_H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885465 ID=CV885465; Name=CV885465; organism=Citrus sinensis; type=EST; length=993bp
TTTTTTTTTTTTTTTTCTTGCAATTCTCATTTTTTTAAACATCATGTACA
GTTACGTTTATCCACACATATTACAAAAGCAAATCGAGTAATAATCATAC
CTCTCTGGGAGCAAATTGTTGAATTAACCGGAAAAAGGAAAAGTATATGT
AAAGAATGGGAATGGCTCCATACTAGTGAAAACGAGCAGCCAAGTTCTTT
CTTTTAAATTAGGTGTTTCTATGTATTGACTAGGCCACAAAGAATAGGAA
AATCATAAGAAAAAAAATCAATACAAAGAATATCTTGATCATTAGCCACC
TATTTGACGATATACTGTTGAGGTACTTGAGCAAAGCTCCCTGTGCCCCC
TCTACATTTGCCATGGTGTCATCCATGTTCTCATCAATCCTGATAGCAAT
CTCCCCTTGCTGAGAGACCAGGGTCGCAAGCTGGTTGAAGATGTTGCCCA
GCTCATGGATGGTAGACTCTACATTCTGAAGAGCTTCAGCTCTGCTCTGC
ATGTAACTGTCTTGCAATGGAACCATCTGCTGTTGCTGTTGTTGCTGATG
GTGCTGTTGTTGCTGATGGTGCTGTTGCTGCTGCAATAATGGCTGACTCT
CCCCATCCTGCTTCCTGGGAAACAACTGAGAGGAAGATGGTGACCCATTA
GCCCATGGAGGAGGGGAGCTTGAAGTACTAGCAGCAGCCGACCTGGTAGC
CAGAGGACGCTGACGAACAAAAGGATTTGCAGAATCCTTAGAAGCAGTGG
AAGAAAACAATTGTCTTCTACTCTCATGAACCTTCAAATTCTCTGTTCGC
ATGGTAAGGACTTCTTTAAACTCTTTTGTGGCACTCATCAGACGATTCTT
CAGGTCATCTACAACTGTAGTTGAATGACTAGTAGTGTCACTGGAGATAC
CATCATTTCTAGAGTTGCTGACGAGTTGAAGGTCCACCACAGCAGAGTTC
AGTGCAGTAATATCCTGCTTGATGACAGCTGTCAATTCTTGAA
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