EY665388

Overview
NameEY665388
Unique NameEY665388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1022
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665388_ssr775 microsatellite EY665388_ssr775:775..784. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.621e-69
Identity = 123/128 (96.09%), Postives = 127/128 (99.22%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLVANE+FQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERL+KIRNHRGLRHYWG
Sbjct:    1 MSLVANEEFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWG 128

HSP 2 Score: 29.6462 bits (65), Expect = 6.621e-69
Identity = 14/20 (70.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRGK  +G S+K
Sbjct:  133 GQHTKTTGRRGK-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.474e-55
Identity = 96/128 (75.00%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRV+NTN+DG++KIMFALTSIKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERL+KIR HRGLRHYWG
Sbjct:    1 MSLVIPEKFQHILRVMNTNIDGRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 4.474e-55
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.733e-54
Identity = 94/128 (73.44%), Postives = 116/128 (90.62%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            M+L+  E FQHILRV+NTN+DGK+KIMFA+T+IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERL+KIR HRGLRHYWG
Sbjct:    1 MALIIPEKFQHILRVMNTNIDGKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWG 128

HSP 2 Score: 27.7202 bits (60), Expect = 3.733e-54
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGK 503
            GQHT+TTGRRG+
Sbjct:  133 GQHTKTTGRRGR 144
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.661e-51
Identity = 89/128 (69.53%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 1.661e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.251e-51
Identity = 88/128 (68.75%), Postives = 113/128 (88.28%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 6.251e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
[Close]
BLAST of EY665388 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.148e-51
Identity = 88/128 (68.75%), Postives = 112/128 (87.50%), Query Frame = 1 
Query:   70 MSLVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLEKIRNHRGLRHYWG 453
            MSLV  E FQHILRVLNTN+DG++KI FA+T+IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERL+KIR HRGLRH+WG
Sbjct:    1 MSLVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWG 128

HSP 2 Score: 28.4906 bits (62), Expect = 8.148e-51
Identity = 13/20 (65.00%), Postives = 17/20 (85.00%), Query Frame = 3 
Query:  468 GQHTRTTGRRGKGMLGSSQK 527
            GQHT+TTGRRG+  +G S+K
Sbjct:  133 GQHTKTTGRRGR-TVGVSKK 151
The following BLAST results are available for this feature:
BLAST of EY665388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RS18_ARATH6.621e-6996.0940S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE4.474e-5575.0040S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR3.733e-5473.4440S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE1.661e-5169.5340S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU6.251e-5168.7540S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT8.148e-5168.7540S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG8.148e-5168.7540S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE8.148e-5168.7540S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN8.148e-5168.7540S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_CAPHI8.148e-5168.7540S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-D01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665388 ID=EY665388; Name=EY665388; organism=Citrus sinensis; type=EST; length=1022bp
ACTTGCTGCAGCTTCATTTGCACGCCGAAGAGCCTCTCTTCTCTTCATCA
TCAATCCTCACAATCGAAAATGTCTCTGGTGGCGAACGAAGATTTTCAGC
ACATTTTGCGTGTGCTGAACACTAACGTCGACGGGAAGCAGAAGATTATG
TTTGCTCTTACTTCAATTAAGGGTATTGGAAGGCGACTGGCTAACATCGT
TTGCAAGAAAGCTGATGTTGACATGAACAAGAGGGCCGGTGAACTATCTG
CTGCTGAACTTGACAATCTCATGGTCGTTGTTGCAAATCCCCGACAGTTT
AAAATCCCTGATTGGTTCTTGAACAGACAGAAGGATTACAAAGATGGAAA
GTATTCTCAGGTTGTATCCAATGCACTGGACATGAAGTTGAGAGATGATT
TGGAGCGTCTGGAAAAGATCAGGAACCACCGTGGTCTCAGGCACTACTGG
GGTCCTTCGTGTCCGTGGGACAACACACCAGGACCACGGGTCGTCGTGGG
AAAGGAATGTTGGGGTCCTCCCAAAAACCGTTGAACCTGTCCCGTAATAA
ATGGGTTTAGAAAAATACTAAAAACCAAGGTTCAAGAAAAAAATTTGGAA
ATGGCTATTGCTAAAATTTTTCGAAACCGAAAAAAGTGGAATTATTTTTT
CTTTCATAAGACAGGGGGATTTAGCGAGTAAGAAAGGGAGAGGGCCTAAA
TACAAACGATGATGGCGACGAGGGAGAGAGAGTAAGCGAGAACGACAGGC
CGGGGACGCACAAAAGAGAAAAACGAGAGAGAGAACAAAAAGGGAGGGGG
GGCGGGCCAAAAAAGAAGCCTACCAGACACACAAGGAACGCCAATCGACG
TGAACTAAAAAAAGGCAGAAAAGAGACATAACAGAGAGAGAAACAGGCAA
ACAAACCACACGGCCCCAAAGCCAGGAAAAATCAACAATAAATAGGAACG
GAACAGACACGAGAAAAGAAGAAACCTAGAGAATCACAGGCGCAGAGCTA
CGACGACAGGGCGGGAGAACTA
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