EY665385

Overview
NameEY665385
Unique NameEY665385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1051
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY665385_ssr72 microsatellite EY665385_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 4.002e-54
Identity = 109/172 (63.37%), Postives = 125/172 (72.67%), Query Frame = 3
Query:  135 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEGKPLELLYEKKIPFH 650
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELI A+WAMLGAAGF IPE  NK+GA CGPEAVWFK   ALL +G  L   + K IP +
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKT-GALLLDGNTLN-YFGKNIPIN 170          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.709e-18
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  315 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GL+  P  F++Y+  ELI A+WA+LGA G   PE  +++      E VWFK    + ++G
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADG 127          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.538e-18
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        +IP YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE  +K G   G EAVWFK    + SEG
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGSQIFSEG 141          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.035e-18
Identity = 49/97 (50.52%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I ++WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 141          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.882e-18
Identity = 48/98 (48.98%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  315 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            ++YGP+R  +L  G    +  P YLTGE PGDYG+D  GL+  P+ F +Y+  ELI A+WAMLGA G   PE   K G   G EAVWFK    + SEG
Sbjct:   35 EFYGPNRAKWL--GPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG-EAVWFKAGAQIFSEG 129          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.882e-18
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ FSK +  E+I ++WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 144          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.882e-18
Identity = 48/97 (49.48%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE F + G   G EAVWFK    + SEG
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEG 142          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.882e-18
Identity = 48/97 (49.48%), Postives = 59/97 (60.82%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        E P YLTGE PGDYG+D  GL+  P+ FSK +  E+I ++WAMLGA G   PE  ++ G   G EAVWFK    + SEG
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEG 145          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.882e-18
Identity = 49/97 (50.52%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GL+  P+ F+K +  E+I  +WAMLGA G   PE   + G   G EAVWFK    + SEG
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEG 141          
BLAST of EY665385 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.882e-18
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  318 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLNKKPDDFSKYQAYELISAKWAMLGAAGFSIPETFNKFGATCGPEAVWFKNWEALLSEG 608
            WYGPDR  +L        +IP YLTGE PGDYG+D  GL+  P+ F++ +  E+I ++WAMLGA G + PE   K G   G EAVWFK    + +EG
Sbjct:   49 WYGPDRPKYLGPF---SEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFG-EAVWFKAGSQIFAEG 141          
The following BLAST results are available for this feature:
BLAST of EY665385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB26_ARATH4.002e-5463.37Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE2.709e-1844.90Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI3.538e-1849.48Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB29_MAIZE6.035e-1850.52Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2_CHLRE7.882e-1848.98Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA7.882e-1849.48Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP7.882e-1849.48Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA7.882e-1849.48Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_MAIZE7.882e-1850.52Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA7.882e-1847.42Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-C10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665385 ID=EY665385; Name=EY665385; organism=Citrus sinensis; type=EST; length=1051bp
TTTTTTTTTTCCTTTCGCACCGCAGTACGGTCGGTATTCCGGGTCGACCC
ACGCGTCCGCTAACACAAAGAAGCAGCAGCAGCCACACTCTGAAGATGGC
TTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGTTAAGGAGA
TGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCA
GGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAA
GAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTA
ACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCC
GAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGT
TCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAACAAGAAACCAGACG
ACTTCAGCAAATATCAGGCATATGAATTGATTTCTGCCAAATGGGCCATG
CTTGGTGCTGCTGGTTTCTCCATTCCGGAAACCTTTAACAAGTTTGGGGC
TACCTGTGGTCCTGAAGCTGTCTGGTTCAAGAACTGGGAAGCTCTACTTT
CTGAAGGAAAACCATTGGAACTACTTTACGAAAAAAAAATCCCATTCCAC
CCTTGTTTTTGCGGACATTGGTAAAAAATAGTTCTTGAAAGGGGAGGGAT
GAATATAATAGAAACCCCCAAACGGGTTGGAAATTTGGGAGGAAAAAGCC
CTCACCCCCGAGGGGCACAATAGAACACAAATGGGATATAGAAAAAAGAA
CTCAGGAACAATTTTAGAATGAGCTAAAAAAGCAAGAAAAAAAAAAAAAA
GAGAGGAAAATGCGAAGTTTTTGGCGAGTAATGGAAAATAATCATTCACC
CAAAGATATAAAATAAAAGATAAAATAACAGGAATAAATATAAAAAAAAA
AAAAGACATAAAATAAAAAAACCTCAGAAGTAGAACATTTAATGTGAAAA
AACATCAAGCGATGTACTAAAAAGAATTGGAAGTGGATAAGCAAAAAATG
A
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