CV885204

Overview
NameCV885204
Unique NameCV885204
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12816 contig Csv1_Contig12816:351..1171. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.369e-69
Identity = 131/177 (74.01%), Postives = 151/177 (85.31%), Query Frame = -3
Query:  292 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 819
            KK+S GV GGAT  WVLF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EKA AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct:   94 KKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 3.373e-68
Identity = 130/177 (73.45%), Postives = 148/177 (83.62%), Query Frame = -3
Query:  292 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 819
            KK+S GVLGGATA WV+F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD   EKA  E+KKQYAV D KVLSKIP   LK+KKK
Sbjct:   98 KKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.859e-64
Identity = 123/180 (68.33%), Postives = 141/180 (78.33%), Query Frame = -3
Query:  292 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL----SKIPRSLKDKKK 819
            KK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D KVL    SKIPR   +KKK
Sbjct:   77 KKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.466e-63
Identity = 123/167 (73.65%), Postives = 139/167 (83.23%), Query Frame = -3
Query:  319 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 819
            KK+S GVLG AT  W+LF+LLEY+LLTL  H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VLL T+PV+YEKYED+VD F EKA  EIKKQY  FD KVLSK+
Sbjct:   73 KKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.621e-62
Identity = 116/177 (65.54%), Postives = 145/177 (81.92%), Query Frame = -3
Query:  292 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDKKK 819
            KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EKA  E++KQY VFD KVLSKIP  SLK K K
Sbjct:   77 KKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 8.897e-61
Identity = 115/175 (65.71%), Postives = 141/175 (80.57%), Query Frame = -3
Query:  298 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDK 819
            KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EK   E+KK Y VFD KVLSK+P  SLK K
Sbjct:   77 KKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.629e-46
Identity = 90/168 (53.57%), Postives = 121/168 (72.02%), Query Frame = -3
Query:  316 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 819
            KK++ G+L   T IW+LF      LLT +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL+HTVP++YEKYED +D  +EKA  E+KK Y VF+AK LSKIP
Sbjct:   79 KKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 7.830e-41
Identity = 80/176 (45.45%), Postives = 115/176 (65.34%), Query Frame = -3
Query:  292 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 819
            KKISA VL GATAIWVLF+ + +H L+LVC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV  HT+PV+YE+YED VD F +    +    Y   D   LS+IP      KK
Sbjct:   70 KKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKK 245          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.435e-34
Identity = 72/175 (41.14%), Postives = 110/175 (62.86%), Query Frame = -3
Query:  295 KISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR-SLKDKK 816
            KI+A ++ G + +W L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L ++A GRD   F      L++VSI+G++ NF+ L +I FV + T+PV+YE YED VD+ + K   ++KK Y   D  VLSKIPR ++K+KK
Sbjct:   49 KIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKK 223          
BLAST of CV885204 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 9.293e-26
Identity = 63/175 (36.00%), Postives = 105/175 (60.00%), Query Frame = -3
Query:  310 KKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRF---EINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 819
            KK S  +LG  T IW LF+++EY  +T +C  L++ + +  +WS   +S  I   PP I ++ I E       S  RF   +IN     L +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ +   + K+  ++KK    F++KV++KIP++
Sbjct:   40 KKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE-------SNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKA 207          
The following BLAST results are available for this feature:
BLAST of CV885204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLB_ARATH1.369e-6974.01Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH3.373e-6873.45Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH3.859e-6468.33Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.466e-6373.65Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.621e-6265.54Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH8.897e-6165.71Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.629e-4653.57Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH7.830e-4145.45Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH5.435e-3441.14Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLN_ARATH9.293e-2636.00Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T7_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885204 ID=CV885204; Name=CV885204; organism=Citrus sinensis; type=EST; length=821bp
TTTTTTTTTTTTTTTTTGGAACAAATGTACAAACACACTAATTGATAAAA
AACATAATAACACATCAGCATAATACTCACACATATCCATGCAAATAGCT
ACGACATATGTAGCATAAACAAGTACAAAATATCCATATTGTGAACCCAA
CCACCTCTAGAACAACAAAGGAATAAAACAGGGTTCAAGCCAACACTGGA
TAACAGTTTCATAACACCTAGATAAAATACTTTCTACCAAATGTGTGTCA
GAACCTAGCAAAGACCACAAATTTATACCACCATTCTAAGCCTTCTTCTT
GTCCTTCAATGACCTCGGTATCTTACTTAAGACCTTGGCATCAAAGACTG
CATACTGCTTCTTGATCTCAGCCCATGCCTTCTCAGAAAATGAATCCACC
CGATCCTCATACTTCTCATATATCACAGGCACAGTGTGAAGCAGTACAAA
AACTATGTAGAACAAGGTCAAGAAATTGCACCAGCTCCCCACAATCGACA
CAACCCACAAGCCAGCAATCACCGAGAGAAACTTCTTCAGATCTCTTCCA
GATGCTATTTCCCTCAGAAGAGTGAAGGCCCTATTGATCTCAAACCTAAG
TGCAGAGGCCAACTGTAAAACTGGTTCCTCAGGGATATATACTTCCGGAA
TGCGTGGTGGAGACTTGTTAATGAAGGTGGAAGCATTAGACCACAAGAAA
AGCACCGCAAGTGCAACAATCAGGCAGTGACAGACAAGAGTTAGAAGGTG
GTACTCAAGCAATTGAAACAGAACCCATATTGCAGTAGCCCCACCAAGTA
CTCCTGCTGAAATCTTCTTGT
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