CV885203

Overview
NameCV885203
Unique NameCV885203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV885203_ssr86 microsatellite CV885203_ssr86:86..97. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12816 contig Csv1_Contig12816:112..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 330.102 bits (845), Expect = 8.001e-90
Identity = 168/262 (64.12%), Postives = 199/262 (75.95%), Query Frame = 2
Query:    5 MADEHKHEEPAG-----------ESVMEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR 748
            MADEHKHEE +            ES+MEK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WVLF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EKA AE+KKQYAV DAKV SKIPR
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPR 262          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 326.635 bits (836), Expect = 8.846e-89
Identity = 167/246 (67.89%), Postives = 192/246 (78.05%), Query Frame = 2
Query:    5 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 742
            MA+EHKHEE    S+MEKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+LF+LLEY+LLTL  H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VLL T+PV+YEKYED+VD F EKA  EIKKQY  FD KVLSK+
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.361e-88
Identity = 168/265 (63.40%), Postives = 197/265 (74.34%), Query Frame = 2
Query:    5 MADEHKHEE------PA-----GESVMEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 745
            MA+EHKH+E      PA      ES+M+KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD   EKA  E+KKQYAV D KVLSKIP
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIP 265          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.716e-87
Identity = 163/253 (64.43%), Postives = 188/253 (74.31%), Query Frame = 2
Query:    5 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL----SKIPR 748
            M ++HKHEE    S++EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D KVL    SKIPR
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPR 249          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.726e-84
Identity = 152/247 (61.54%), Postives = 190/247 (76.92%), Query Frame = 2
Query:    5 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 745
            MA+E +   P  ES+MEKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EKA  E++KQY VFD KVLSKIP
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIP 244          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.787e-81
Identity = 151/247 (61.13%), Postives = 184/247 (74.49%), Query Frame = 2
Query:    5 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 745
            MA+E +      ES+MEKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EK   E+KK Y VFD KVLSK+P
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLP 244          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.054e-61
Identity = 110/200 (55.00%), Postives = 148/200 (74.00%), Query Frame = 2
Query:  146 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 745
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+LF      LLT +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL+HTVP++YEKYED +D  +EKA  E+KK Y VF+AK LSKIP
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.074e-54
Identity = 98/194 (50.52%), Postives = 135/194 (69.59%), Query Frame = 2
Query:  164 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 745
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWVLF+ + +H L+LVC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV  HT+PV+YE+YED VD F +    +    Y   D   LS+IP
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIP 237          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.478e-43
Identity = 83/198 (41.92%), Postives = 124/198 (62.63%), Query Frame = 2
Query:  155 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR 748
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L ++A GRD   F      L++VSI+G++ NF+ L +I FV + T+PV+YE YED VD+ + K   ++KK Y   D  VLSKIPR
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPR 216          
BLAST of CV885203 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.003e-32
Identity = 72/197 (36.55%), Postives = 120/197 (60.91%), Query Frame = 2
Query:  176 REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWS--NASTFINKSPPRIPEVYIPEEPVLQLASALRF---EINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS 751
            R + ++  LGGG+ AD+  W+NKK S  +LG  T IW LF+++EY  +T +C  L++ + +  +WS   +S  I   PP I ++ I E       S  RF   +IN     L +I+SG+D +     +  LW++S+VG++ + LTL YIVFV L T+P++YE+YE+ +   + K+  ++KK    F++KV++KIP++
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISE-------SNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEELTYAASKSGRDMKKLLNKFNSKVINKIPKA 207          
The following BLAST results are available for this feature:
BLAST of CV885203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLB_ARATH8.001e-9064.12Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH8.846e-8967.89Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH3.361e-8863.40Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH3.716e-8764.43Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.726e-8461.54Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.787e-8161.13Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.054e-6155.00Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH7.074e-5450.52Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH1.478e-4341.92Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLN_ARATH2.003e-3236.55Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885203 ID=CV885203; Name=CV885203; organism=Citrus sinensis; type=EST; length=758bp
CGAGATGGCTGACGAGCATAAACACGAGGAACCAGCCGGTGAATCGGTGA
TGGAGAAGATAACGGAGAAGATCCACGGCCACGATTCGTCGTCGTCGTCA
TCGTCATCTGACACCGATGATGATAAGAAGTCATCTACATCCTCCCTCAA
GACCAAAGTATTTCGTCTCTTCGGAAGAGAAAAGCCTGTTCACAAGGTTC
TTGGTGGCGGAAAACCTGCGGATGTTTTCTTATGGAGGAACAAGAAGATT
TCAGCAGGAGTACTTGGTGGGGCTACTGCAATATGGGTTCTGTTTCAATT
GCTTGAGTACCACCTTCTAACTCTTGTCTGTCACTGCCTGATTGTTGCAC
TTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCACCTTCATTAACAAGTCT
CCACCACGCATTCCGGAAGTATATATCCCTGAGGAACCAGTTTTACAGTT
GGCCTCTGCACTTAGGTTTGAGATCAATAGGGCCTTCACTCTTCTGAGGG
AAATAGCATCTGGAAGAGATCTGAAGAAGTTTCTCTCGGTGATTGCTGGC
TTGTGGGTTGTGTCGATTGTGGGGAGCTGGTGCAATTTCTTGACCTTGTT
CTACATAGTTTTTGTACTGCTTCACACTGTGCCTGTGATATATGAGAAGT
ATGAGGATCGGGTGGATTCATTTTCTGAGAAGGCATGGGCTGAGATCAAG
AAGCAGTATGCAGTCTTTGATGCCAAGGTCTTAAGTAAGATACCGAGGTC
ATTGAAGG
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